Publications 2023

Bech PK, Zhang SD, Henriksen NNSE, Bentzon-Tilia M, Strube ML, Gram L 2023 The potential to produce tropodithietic acid by Phaeobacter inhibens affects the assembly of microbial biofilm communities in natural seawater. npj Biofilms and Microbiomes 9:12. https://doi.org/10.1038/s41522-023-00379-3

Blin K, Shaw S, Medema MH, Weber T 2023. The antiSMASH database version 4: additional genomes and BGCs, new sequence-based searches and more. Nucleic Acid Research. 52:D586-D589. https://doi.org/10.1093/nar/gkad984

Blin K, Shaw S, Augustijn HE, Reitz ZL, Biermann F, Alanjary M, Fetter A, Terlouw BR, Metcalf WW, Helfrich EJN, van Wezel GP, Medema MH, Weber T 2023. antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation. Nucleic Acid Research. 51:W46-W50. https://doi.org/10.1093/nar/gkad344

Bradley SA, Lehka BJ, Hansson FG, Adhikari KB, Rago D, Rubaszka P, Haidar AK, Chen L, Hansen LG, Gudich O, Giannakou K, Lengger B, Gill RT, Nakamura Y, Dugé de Bernonville T, Koudounas K, Romero-Suarez D, Ding L, Qiao Y, Frimurer TM, Petersen AA, Beasseau S, Kumar S, Gautron N, Melin C, Marc J, Jeanneau R, O’Connor SE, Courdavault V, Keasling JD, Zhang J, Jensen MK 2023. Biosynthesis of natural and halogenated plant monoterpene indole alkaloids in yeast. Nature Chemical Biology. 19:1551-1560. https://doi.org/10.1038/s41589-023-01430-2

Buenrostro-Munoz, Jarmusch SA, Souza V, Martinez-Cardenas A, Fjardo-Hernandez CA, Yeverino IR, Eguiarte LE, Figueroa M 2023. Metabolomic Diversity in Microbial Mats Under Different Environmental Conditions: A Tool to Test Microbial Ecosystem Chemical Change. Chemistry and Biodiversity. 21:e202300829. https://doi.org/10.1002/cbdv.202300829

Droumpali A, Liu Y, Ferrer-Florensa X, Sternberg C, Dimaki M, Andersen AJC, Strube ML, Kempen PJ, Gram L, Taboryski R 2023. Biosynthesis Enhancement of Tropodithietic Acid (TDA) Antibacterial Compound through Biofilm Formation by Marine Bacteria Phaeobacter inhibens on Micro-Structured Polymer Surfaces RCS Advances. 13:33159. https://doi.org/10.1039/d3ra05407a

Gallegos-Monterrosa R, Kovács ÁT 2023. Phenotypic plasticity: The role of a phosphatase family Rap in the genetic regulation of Bacilli. Molecular Microbiology 120:20-31. https://doi.org/10.1111/mmi.15060

Garcias-Bonet N, Roik A, Dungan A, Villela H, Garcia F, Quigley K, Sweet M, Berg G, Hoj L, Bourne DG, Ushijima B, Sogin M, Gram L, Duarte G, Hirt H, Smalla K, Rosado A, Carvalho S, Vega-Thurber R, Ziegler M, Tierney B, Mason CE, Blackall L, van Oppen MJH, Voolstra CR, Peixoto R 2023. Horizon scanning the application of probiotics for wildlife. Trends in Microbiology 32:525-269. https://doi.org/10.1016/j.tim.2023.08.012

Geers AU, Strube ML, Bentzon-Tilia M 2023. Small spatial scale drivers of secondary metabolite biosynthetic diversity in environmental microbiomes. mSystems 8:e00724-22. https://doi.org/10.1128/msystems.00724-22

Hu G, Wang Y,  Blake C, Nordgaard M, Liu X, Wang B, Kovács ÁT 2023. Parallel genetic adaptation of Bacillus subtilis to different plant species. Microbial Genomics 9:14. https://doi.org/10.1099/mgen.0.001064

Hu G, Wang Y, Liu X, Strube ML, Wang B, Kovács AT 2023/ Species and condition dependent mutational spectrum in experimentally evolved biofilms of Bacilli. mSystems 8:e00548-23. https://doi.org/10.1128/msystems.00548-23 

Khatri S, Sazinas P, Strube M, Ding L, Dubey S, Shivay YS, Sharma S, Jelsbak L 2023. Pseudomonas is a key player in conferring disease suppressiveness in organic farming. Plant Soil 503:85-104 https://doi.org/10.1007/s11104-023-05927-6. NB issue published in 2024

Lindqvist LL, Jarmusch SA, Sonnenschein EC, Strube ML, Kim J, Nielsen MW, Kempen PJ, Schoof EM, Zhang SD, Gram L 2023. Tropodithietic Acid, a Multifunctional Antimicrobial, Facilitates Adaption and Colonization of the Producer, Phaeobacter piscinae. mSphere 8:e00517-22. https://journals.asm.org/doi/10.1128/msphere.00517-22

Lozano-Andrade CN, Nogueira CG, Wibowo M, Kovács ÁT 2023. Establishment of a transparent soil system to study Bacillus subtilis chemical ecology. ISME Communications. 3:110. https://doi.org/10.1038/s43705-023-00318-5

Lyng M, Kovács ÁT 2023. Frenemies of the soil: Bacillus and Pseudomonas interspecies interactions. Trends in Microbiology 31:845-857. https://doi.org/10.1016/j.tim.2023.02.003

Murphy R, Strube ML 2023. RibDif2: Expanding amplicon analysis to full genomes. Bioinformatics Advances 3:vbad11. https://doi.org/10.1093/bioadv/vbad111 

Shaaban M, Abdel-Razek AS, Previtali V, Clausen MH, Gotfredsen CH, Laatsch H, Ding L 2023. Sulochrins and alkaloids from a fennel endophyte Aspergillus sp. FVL2, Natural Product Research 37:1310-1320. https://doi.org/10.1080/14786419.2021.2005054

Su J, Wang Y, Bai M, Peng T, Li H, Xu HJ, Guo G, Bai H, Rong N, Sahu SK, He H, Liang X, Jin C, Liu W, Strube ML, Gram L, Li Y, Wang E, Liu H, Wu H 2023. Soil conditions and plant microbiome boost the accumulation of monoterpenes in the fruit of Citrus reticulata ‘Chachi’. Microbiome 11:61. https://doi.org/10.1186/s40168-023-01504-2

Sun X, Xie J, Zheng D, Wang W, Xia R, Wang W, Xun W, Huang Q, Zhang R, Kovács ÁT, Xu Z, Qirong S 2023. Metabolic interactions affect the biomass of synthetic bacterial biofilm communities. mSystems 8:e01045-23. https://doi.org/10.1128/msystems.01045-23.

Yang Z, Strøbech E, Qiao Y, Konakall NG, Harris P, Peschel G, Agler-Rosenbaum M, Weber T, Andreasson E, Ding L 2023 Streptomyces alleviate abiotic stress in plant by producing pteridic acids. Nature Communications 14:7398. https://doi.org/10.1038/s41467-023-43177-3 

Xu A, Nielsen LJD, Song L, Maróti G, Strube ML, Kovács ÁT 2023. Enhanced specificity of Bacillus metataxonomics using a tuf-targeted amplicon sequencing approach. ISME Communications 3:126. https://doi.org/10.1038/s43705-023-00330-9