Publications 2023

Bech, P.K. ; Zhang, S.D. ; Henriksen, N.N.S.E. ; Bentzon-Tilia, M. ; Strube, M.L. and Gram, L.. / The potential to produce tropodithietic acid by Phaeobacter inhibens affects the assembly of microbial biofilm communities in natural seawater. In: npj Biofilms and Microbiomes. 2023 ; Vol. 9, article number: 12. https://doi.org/10.1038/s41522-023-00379-3

Blin, K. ; Shaw, S. ; Augustijn, H.E. ; Reitz, Z.L. ; Biermann, F. ; Alanjary, M. ; Fetter, A. ; Terlouw, B.R. ; Metcalf, W.W. ; Helfrich, E.J.N. ; van Wezel, G.P. ; Medema, M.H. ; Weber, T.. / antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation. In: Nucleic Acid Research. 2023 ; Vol. 51. https://doi.org/10.1093/nar/gkad344

Bradley, S.A ; Lehka, B.J. ; Hansson, F.G. ; Adhikari, K.B. ; Rago, D. ; Rubaszka, P. ; Haidar, A.K. ; Chen, L. ; Hansen, L.G. ; Gudich, O. ; Giannakou, K. ; Lengger, B. ; Gill, R.T. ; Nakamura, Y. ; Dugé de Bernonville, T. ; Koudounas, K. ; Romero-Suarez, D. ; Ding, L. ; Qiao, Y. ; Frimurer, T.M. ; Petersen, A.A. ; Beasseau, S. ; Kumar, S. ; Gautron, N. ; Melin, C. ; Marc, J. ; Jeanneau, R. ; O’Connor, S.E. ; Courdavault, V. ; Keasling, J.D. ; Zhang, J. and Jensen, M.K.. / Biosynthesis of natural and halogenated plant monoterpene indole alkaloids in yeast. Accepted In: Nature Chemical Biology. 2023

Buenrostro-Munoz ; Jarmusch S.A. ; Souza V. ; Martinez-Cardenas A. ; Fjardo-Hernandez C.A. ; Yeverino I.R. ; Eguiarte L.E. and Figueroa M.. / Metabolomic Diversity in Microbial Mats Under Different Environmental Conditions: A Tool to Test Microbial Ecosystem Chemical Change. Published online In: Chemistry and Biodiversity. 2023. https://doi.org/10.1002/cbdv.202300829

Gallegos-Monterrosa, R. and Kovács, Á.T.. / Phenotypic plasticity: The role of a phosphatase family Rap in the genetic regulation of Bacilli. In: Molecular Microbiology. 2023 ; Vol. 120, Issue 1. https://doi.org/10.1111/mmi.15060

Garcias-Bonet, N. ; Roik, A. ; Dungan, A. ; Villela, H. ; Garcia, F. ; Quigley, K. ; Sweet, M. ; Berg, G. ; Hoj, L. ; Bourne, D.G. ; Ushijima, B. ; Sogin, M. ; Gram, L. ; Duarte, G. ; Hirt, H. ; Smalla, K. ; Rosado, A. ; Carvalho, S. ; Vega-Thurber, R. ; Ziegler, M. ; Tierney, B. ; Mason, C.E. ; Blackall, L. ; van Oppen, M.J.H. ; Voolstra, C.R. and Peixoto, R. / Horizon scanning the application of probiotics for wildlife. Published Online In: Trends in Microbiology. 2023. https://doi.org/10.1016/j.tim.2023.08.012

Geers, A.U. ; Strube, M.L. and Bentzon-Tilia, M.. / Small spatial scale drivers of secondary metabolite biosynthetic diversity in environmental microbiomes. In: mSystems. 2023 ; Vol. 8, No. 2. https://doi.org/10.1128/msystems.00724-22

Hu, G. ; Wang ,Y. ; Blake, C. ; Nordgaard, M. ; Liu, X. ; Wang, B. and Kovács, Á.T.. / Parallel genetic adaptation of Bacillus subtilis to different plant species. In: MICROBIAL GENOMICS. 2023; Vol. 9, Issue 7. https://doi.org/10.1099/mgen.0.001064

Hu, G. ; Wang, Y. ; Liu, X. ; Strube, M.L. ; Wang, B. and Kovács, A.T.. / Species and condition dependent mutational spectrum in experimentally evolved biofilms of Bacilli. Accepted In: mSystems. 2023.

Khatri, S. ; Sazinas, P. ; Strube, M.L. ; Ding, L. ; Dubey, S. ; Shivay, Y.S. ; Sharma, S. and Jelsbak, L.. / Pseudomonas is a key player in conferring disease suppressiveness in organic farming. Published online In: Plant and Soil. 2023. https://doi.org/10.1007/s11104-023-05927-6

Lindqvist, L.L. ; Jarmusch, S.A. ; Sonnenschein, E.C. ; Strube, M.L. ; Kim, J. ; Nielsen, M.W. ; Kempen, P.J. ; Schoof, E.M. ; Zhang, S.D. and Gram, L.. / Tropodithietic Acid, a Multifunctional Antimicrobial, Facilitates Adaption and Colonization of the Producer, Phaeobacter piscinae. In: mSphere. 2023 ; Volume 8, Issue 1, e00517-22. https://journals.asm.org/doi/10.1128/msphere.00517-22

Lozano-Andrade, C.N. ; Nogueira, C.G. ; Wibowo, M. and Kovács, Á.T.. / Establishment of a transparent soil system to study Bacillus subtilis chemical ecology. Published online In: ISME Communications. 2023. https://doi.org/10.1038/s43705-023-00318-5

Lyng, M. and Kovács, Á.T.. / Frenemies of the soil: Bacillus and Pseudomonas interspecies interactions. In: Trends in Microbiology. 2023 ; Vol. 31, No. 8. https://doi.org/10.1016/j.tim.2023.02.003

Murphy, R. and Strube, M.L.. / RibDif2: Expanding amplicon analysis to full genomes. Accepted In: Bioinformatics Advances. 2023. 

Su, J. ; Wang, Y. ; Bai, M. ; Peng, T. ; Li, H. ; Xu, H.J. ; Guo, G. ; Bai, H. ; Rong, N. ; Sahu, S.K. ; He, H. ; Liang, X. ; Jin, C. ; Liu, W. ; Strube, M.L. ; Gram, L. ; Li, Y. ; Wang, E. ; Liu, H. and Wu, H.. / Soil conditions and plant microbiome boost the accumulation of monoterpenes in the fruit of Citrus reticulata ‘Chachi’. In: Microbiome. 2023 ; Vol 11, 61. https://doi.org/10.1186/s40168-023-01504-2

Sun, X. ; Xie, J. ; Zheng, D. ; Wang, W. ; Xia, R. ; Wang, W. ; Xun, W. ; Huang, Q. ; Zhang, R. ; Kovács, Á.T. ; Xu, Z. and Qirong, S.. / Metabolic interactions affect the biomass of synthetic bacterial biofilm communities. Accepted In: mSystems. 2023.

Yang, Z. ; Strøbech, E. ; Qiao, Y. ; Konakall, N.G. ; Harris, P. ; Peschel, G. ; Agler-Rosenbaum, M. ; Weber, T. ; Andreasson, E. and Ding, L.. / Streptomyces alleviate abiotic stress in plant by producing pteridic acids. Accepted In: Nature Communications. 2023.