Publications 2021

Supported by DNRF137

Ardalani H, Anam S, Kromphardt KJK, Staerk D, Kongstad KT 2021. Coupling microplate‐based antibacterial assay with liquid chromatography for high‐resolution growth inhibition profiling of crude extracts: validation and proof‐of‐concept study with Staphylococcus aureus. Molecules 26, 6. https://doi.org/10.3390/molecules26061550

Arnaouteli S, Bamford NC,  Stanley-Wall NR, Kovács ÁT 2021 Bacillus subtilis biofilm formation and social interactions. Nature Reviews Microbiology. 19. https://doi.org/10.1038/s41579-021-00540-9

Blin K,  Shaw S, Kautsar SA. Medema MH, Weber T 2021 The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes. Nucleic Acids Research. 49. https://doi.org/10.1093/nar/gkaa978

Blin K, Shaw S, Kloosterman AM, Charlop-Powers Z, van Wezel GP, Medema MH, Weber T 2021. antiSMASH 6.0: improving cluster detection and comparison capabilities. Nucleic Acids Research. 49 https://doi.org/10.1093/nar/gkab335

Borre I, Sonnenschein EC.2021. Draft genome sequences of nine environmental bacterial isolates colonizing plastic. In: Microbiology Resource Announcements. 10, 11. https://doi.org/10.1128/MRA.01485-20

Buijs Y, Zhang S, Jørgensen KM, Isbrandt T, Larsen TO, Gram L 2021 Enhancement of antibiotic production by co-cultivation of two antibiotic producing marine Vibrionaceae strains. FEMS Microbiology Ecology 97. https://doi.org/10.1093/femsec/fiab041.

Ding L, Zhang  SD,  Haidar A.K.,  Bajimaya M,  Guo Y,  Larsen TO, Gram L 2021 Polycyclic tetramate macrolactams–a group of natural bioactive metallophores. Frontiers in Chemistry.  9: 772858. https://doi.org/10.3389/fchem.2021.772858

Dragoš A, Andersen AJC, Lozano-Andrade CN, Kempen PJ, Kovács ÁT, Strube ML 2021. Phages carry interbacterial weapons encoded by biosynthetic gene clusters. Current Biology. 31, 1-11. https://doi.org/10.1016/j.cub.2021.05.046

Dragoš A, Priyadarshini B, Hasan Z, Strube ML, Kempen PJ, Maróti G, Kaspar C, Bose B, Burton BM, Bischofs IB, Kovács ÁT 2021 Pervasive prophage recombination occurs during evolution of spore-forming Bacilli. ISME Journal. 15. https://doi.org/10.1038/s41396-020-00854-1

Eelderink-Chen Z, Bosman J, Sartor F, Dodd A, Kovács ÁT, Merrow M 2021 A circadian clock in a nonphotosynthetic prokaryote. Science Advances. 7. https://doi.org/10.1126/sciadv.abe2086

Hansen J, Melchiorsen J, Mateiu RV, Ciacotich N, Gram L, Sonnenschein EC 2021 Effect of polymer type on the colonization of plastic pellets by marine bacteria. FEMS Microbiology Letters. 368. https://doi.org/10.1093/femsle/fnab026

Hansen ML, He Z, Wibowo M, Jelsbak L  2021 A whole-cell biosensor for detection of 2,4-diacetylphloroglucinol (DAPG)-producing bacteria from grassland soil. Applied and Environmental Microbiology. 87, 3. https://doi.org/10.1128/AEM.01400-20

Jarmusch, SA, van der Hooft, JJJ, Dorrestein P, Jarmusch AK  2021 Advancements in Capturing and Mining Mass Spectrometry Data Are Transforming Natural Products Research. Natural Product Reports.38. https://doi.org/10.1039/D1NP00040C

Kautsar SA, Blin K, Shaw S, Weber T, Medema MH 2021 BiG-FAM: the biosynthetic gene cluster families database. Nucleic Acids Research. 49. https://doi.org/10.1093/nar/gkaa812

Kiesewalter HT, Lozano-Andrade CN, Wibowo M, Strube ML, Maróti G, Snyder D, Jørgensen TS, Larsen TO, Cooper VS, Weber T, Kovács ÁT 2021 Genomic and chemical diversity of Bacillus subtilis secondary metabolites against plant pathogenic fungi. mSystems. 6, 1. https://doi.org/10.1128/mSystems.00770-20

Lauritsen JG, Hansen ML, Bech PK, Jelsbak L, Gram L, Strube ML 2021 Identification and differentiation of Pseudomonas species in field samples using an rpoD amplicon sequencing methodology. mSystems. 6, 4. https://doi.org/10.1128/mSystems.00704-21

Li L, Wang H, Wang S, Xu Y, Liang H, Liu H, and Sonnenschein EC 2021The Draft Genome of the Centric Diatom Conticribra weissflogii (Coscinodiscophyceae, Ochrophyta). Protist. 172 (5-6): 125845 (1-6). https://doi.org/10.1016/j.protis.2021.125845

Lozano-Andrade CN, Strube ML, Kovács ÁT  2021 Complete Genome Sequences of Four Soil-Derived Isolates for Studying Synthetic Bacterial Community Assembly. Microbiology Resource Announcements. 10, 46. https://doi.org/10.1128/MRA.00848-21

Sonnenschein EC, Jiménez G, Castex M, Gram L 2021 The Roseobacter-group bacterium Phaeobacter as safe probiotic solution for aquaculture. Applied Environmental Microbiology. 87, 5. https://doi.org/10.1128/AEM.02581-20

Steinke K, Mohite OS, Weber T, Kovács ÁT 2021 Phylogenetic distribution of secondary metabolites in the Bacillus subtilis species complex. mSystems. 6, 2. https://doi.org/10.1128/mSystems.00057-21

Strube ML 2021 RibDif: can individual species be differentiated by 16S sequencing?. Bioinformatics Advances. 1, 1. https://doi.org/10.1093/bioadv/vbab020

Visagie CM, Frisvad JC, Visagie A, Houbraken, J, Seifert KA, Samson RA, Jacobs K 2021 A re-evaluation of Penicillium section Canescentia, including the description of five new species. Persoonia. 46. https://doi.org/10.3767/persoonia.2021.46.06

Wang X, Isbrand T, Christensen EØ, Melchiorsen J,  Larsen TO,  Zhang S-D, Gram L  2021 Identification and verification of the prodigiosin biosynthetic gene cluster (BGC) in Pseudoalteromonas rubra S4059. Microbiology Spectrum. 9, 2. https://doi.org/10.1128/Spectrum.01171-21

Wang X, Isbrandt T, Strube ML, Paulsen SS, Nielsen MW, Buijs Y, Schoof EM, Larsen TO, Gram L, Zhang SD 2021 Chitin degradation machinery and secondary metabolite profiles in the marine bacterium Pseudoalteromonas rubra S4059. Marine Drugs 19. https://doi.org/10.3390/md19020108

Wang X, Subko K, Kildgaard S, Frisvad JC and Larsen TO 2021 Mass Spectrometry-Based Network Analysis Reveals New Insights Into the Chemodiversity of 28 Species in Aspergillus section Flavi. Frontiers in Fungal Biology.  2: 719420 (1-13). https://doi.org/10.3389/ffunb.2021.719420

Wang Y, Shuilin L, Gai Y, Liu G, Jin T, Liu H, Gram L, Strube ML, Fan G, Sahu S, Liu S, Gan S, Xie ZZ, Kong LF, Zhang P, Liu X, Wang D 2021 Metagenomic analysis reveals community structure and their metabolic potential for nitrogen acquisition in the oligotrophic surface waters of the Indian Ocean. Frontiers Microbiology. 12. https://doi.org/10.3389/fmicb.2021.518865

Zhang SD, Isbrandt T, Lindqvist LL, Larsen TO, Gram L  2021 Holomycin, an Antibiotic Secondary Metabolite, Is Required for Biofilm Formation by the Native Producer Photobacterium galatheae S2753. Applied Environmental Microbiology. 87. https://doi.org/10.1128/AEM.00169-21