Blin K, Shaw S, Vader L, Szenei J, Reitz ZL, Augustijn HE, Cediel-Becerra JDD , de Crécy-Lagard V, Koetsier RA, Williams SE, Cruz-Morales P, Wongwas S,  Luchsinger AES, Biermann F, Korenskaia A, Zdouc MM, Meijer D,Terlouw BR, van der Hooft JJJ, Ziemert N, Helfrich EJN, Wezel J, Medema MH , Weber T 2025. antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation. Nucleic Acids Research gkaf334 https://doi.org/10.1093/nar/gkaf334

Dinesen C, VertotM, JarmuschSA, Lozano-AndradeCN, AndersenAJC, Kovács ÁT 2025. Coupling of secondary metabolite production in Bacillus subtilis. microLIFE. 6:uqae029 https://doi.org/10.1093/femsml/uqae029

Jarmusch AK, Aron AT, Petras D, Phelan VV, Bittremieux W, Acharya DD, Ahmed MMA, Bauermeister A, Bertin MJ, Boudreau PD, Borges RM, Bowen BP, Brown CJ, Chagas FO, Clevenger KD, Correia MSP, Crandall WJ, Crüsemann M, Damiani T, Fiehn O, Garg N, Gerwick WH, Gilbert JR, Globisch D, Gomes PWP, Heuckeroth S, James CA, Jarmusch SA, Kakhkhorov SA, Kang KB, Kersten RD, Kim H, Kirk RD, Kohlbacher O, Kontou EE, Liu K, Lizama-Chamu I, Luu GT, Knaan TL, Marty MT, McAvoy AC, McCall LI, Mohamed OG, Nahor O, Niedermeyer THJ, Northen TR, Overdahl KE, Pluskal T, Rainer J, Reher R, Rodriguez E, Sachsenberg TT, Sanchez LM, Schmid R, Stevens C, Tian Z, Tripathi A, Tsugawa H, Nishida K, Matsuzawa Y, van der Hooft JJJ, Vicini A, Walter A, Weber T, Xiong Q, Xu T, Zhao HN, Dorrestein PC, Wang M 2025. A Universal Language for Finding Mass Spectrometry Data Patterns, Nature Methods https://www.nature.com/articles/s41592-025-02660-z

Jarmusch SA, Schostag MD, Yang Z, Wang J, Anderson AJC, Weber T, Ding L 2025. Secondary metabolites shape Streptomyces-Streptomyces interaction: Mass Spectrometry Imaging reveals lydicamycins broadly induce sporulation, Applied and Environmental Microbiology 0:e00295-25 https://doi.org/10.1128/aem.00295-25

Lozano-Andrade CN, Dinesen C, Wibowo M, Arenos Bach N, Hesselberg-Thomsen V, Jarmusch SA, Strube ML, Kovács ÁT 2025. Surfactin facilitates establishment of Bacillus subtilis in synthetic communities. ISME Journal 19:wraf013 https://doi.org/10.1093/ismejo/wraf013

Smahajcsik D, Roager L, Strube ML, Zhang S, Gram L 2025. Stronger together: harnessing natural algal communities as potential probiotics for inhibition of aquaculture pathogens. Microbiology Spectrum 0:e00421-25.https://doi.org/10.1128/spectrum.00421-25

Stannius RO, Fusco S, Cowled M, Kovács ÁT 2025. Surfactin accelerates Bacillus subtilis pellicle biofilm development. Biofilms 9:100249 https://doi.org/10.1016/j.bioflm.2024.100249

Stannius RO, Kovács ÁT 2025. Plipastatin is a shared good by Bacillus subtilis during combating Fusarium spp. FEMS Microbial Ecology 101(4), fiaf020 https://doi.org/10.1093/femsec/fiaf020

Stefanic P, Stare E, Floccari VA, Kovac J, Hertel R, Rocha U, Kovács ÁT, Mandic-Mulec I, Strube ML, Dragoš A 2025. Ecology of prophage-like elements in Bacillus subtilis at global and local geographical scale. Cell Reports 44:115197 https://doi.org/10.1016/j.celrep.2024.115197

 

Svendsen PB, Alfastsen L, Gram L, Henriksen NNSE, Bentzon-Tilia M, Zhang SD 2025. Roles of Marine Microbial Natural, Annual Review in Microbiology(accepted)

Zdouc MM, Blin K, (+157 authors), Kovács ÁT, (+129 authors), Weber T, Medema MH 2025. MIBiG 4.0: Advancing biosynthetic gene cluster curation through global collaboration, Nucleic Acids Research 53:gkae1115 https://doi.org/10.1093/nar/gkae1115

Bech PK, Jarmusch SA, Rasmussen JA, Limborg MT, Gram L, Henriksen NNSE 2024. Succession of microbial community composition and secondary metabolism during marine biofilm development. ISME Communication 4:ycae006 https://doi.org/10.1093/ismeco/ycae006

Buijs Y, Geers AU, Nita I, Strube ML, Bentzon-Tilia M 2024. SecMet-FISH: Labeling, visualization, and enumeration of secondary metabolite producing microorganisms. FEMS Microbiology Ecology 100:fiae038 https://doi.org/10.1093/femsec/fiae038

Clemmensen SE, Cowled MS, Kromphardt KJK, Frisvad JC, Larsen TO, Frandsen RJN 2024. The Role and Fate of Patulin in Apple-Associated Fungal-Fungal Interactions. Fungal Ecology 69:101341 https://doi.org/10.1016/j.funeco.2024.101341

Cowled MS, Phippen CB, Kromphardt KJK, Clemmensen SE, Frandsen RJM, Frisvad JC, Larsen TO 2024. Unveiling the Microbial Diversity and Associated Secondary Metabolism on Black Apples. Applied and Environmental Microbiology 90:e0034224 https://doi.org/10.1128/aem.00342-24

Geers AU, Buijs Y, Schostag MD, Elberling B, Bentzon-Tilia M 2024 Exploring spatiotemporal diversity of secondary metabolism in permafrost microbiomes. Environmental Microbiome 19:96 https://doi.org/10.1186/s40793-024-00644-8

Hansen ML, Denes Z, Jarmusch SA, Wibowo M, Lozano-Andrade CN, Kovacs AT, Strube ML, Andersen AJC, Jelsbak L 2024. Resistance towards and biotransformation of Pseudomonas-produced secondary metabolites during community invasion. ISME Journal 18:wrae105 https://doi.org/10.1093/ismejo/wrae105

Lyng M, Þorisdóttir P, Sveinsdóttir SH, Hansen ML, Maróti G,  Jelsbak L, Kovács ÁT 2024. Taxonomy of Pseudomonas spp determines interactions with Bacillus subtilis. mSystems 9:e00212-24 https://doi.org/10.1128/msystems.00212-24

Lyng M, Jørgensen JPB, Schostag MD, Jarmusch SA, Aguilar DKC, Lozano-Andrade CN, Kovács ÁT 2024. Competition for iron shapes metabolic antagonism between Bacillus subtilis and Pseudomonas. ISME Journal 18:1-13 https://doi.org/10.1093/ismejo/wrad001

Maleckis M, Wibowo M, Gren T, Jarmusch SA, Sterndorff EB, Booth T, Henriksen NNSE, Whitford CM, Jiang X, Jørgensen TS, Ding L, Weber T 2024. Biosynthesis of the azoxy compound azodyrecin from Streptomyces mirabilis P8-A2. ACS Chemical Biology 19:641-653 https://doi.org/10.1021/acschembio.3c00632

Maleckis M, Wibowo M, Williams SE, Gotfredsen CH, Sigrist R, Souza LDO,  Cowled MS, Charusanti P, Gren T, Saha S, Moreira JMA, Weber T, Ding L 2024. Maramycin, a cytotoxic isoquinolinequinone terpenoid produced through heterologous expression of a bifunctional indole prenyltransferase /tryptophan indole-lyase in S. albidoflavus. ACS Chemical Biology 19:1303-1310 https://doi.org/10.1021/acschembio.4c00121

Mahmoud M, Abboud MM, Maleckis M, Souza L, Moreira J, Weber T, Gotfredsen CH, Ding L 2024 Pepticinnamins N, O and P, cytotoxic non-ribosomal peptides from a Soil-Derived Streptomyces mirabilis P8-A2, Journal of Natural Products 67:1075-1083 https://doi.org/10.1021/acs.jnatprod.4c00029

Nuhamunada M, Mohite OS, Phaneuf PV, Palsson B, Weber T 2024. BGCFlow: Systematic pangenome workflow for the analysis of biosynthetic gene clusters across large genomic datasets. Nucleic Acids Research 52:5478-5495 https://doi.org/10.1093/nar/gkae314

Parra J, Jarmusch SA, Duncan K 2024. Multi-Omic analysis of antagonistic interactions among free-living Pseudonocardia from diverse ecosystems. Environmental Microbiology. 26:e16635 https://doi.org/10.1111/1462-2920.16635

Richter A, Blei F, Hu G, Schwitalla JW, Lozano-Andrade CN, Jarmusch SA, Wibowo M, Kjeldgaard B, Surabhi S, Jautzus T, Phippen CBW, Tyc O, Arentshorst M, Wang Y, Garbeva P, Larsen TO,  Ram AFJ, van den Hondel CAM, Maróti G, Kovács ÁT 2024. Enhanced niche colonisation and competition during bacterial adaptation to a fungus. Nature Communications 15:4486 https://doi.org/10.1038/s41467-024-48812-1

Roager L, Athena-Vasileiadi D, Gram L, Sonnenschein EC 2024. Antagonistic activity of Phaeobacter piscinae against the emerging fish pathogen Vibrio crassostreae in aquaculture feed algae. Applied and Environmental Microbiology 90:e01439-23 https://doi.org/10.1128/aem.01439-23

Schmidt S, Murphy R, Vizueta J, Schierbech S, Conlon B, Kreuzenbeck N, Vreeburg S, de Peppel Lv, Aanen D, Kolotchèlèma S, Kone Ng, Beemelmanns C, Weber T, Poulsen M 2024. Comparative genomics unravels a rich set of biosynthetic gene clusters with distinct evolutionary trajectories across fungal species(Termitomyces) farmed by termites. Communications Biology 7:1269 https://www.nature.com/articles/s42003-024-06887-y 

Stannius RO, Fusco S, Cowled M, Kovács ÁT 2024. Surfactin accelerates Bacillus subtilis pellicle biofilm development, Biofilms 9:100249 https://doi.org/10.1016/j.bioflm.2024.100249

Song L, Nielsen LJD, Xu X, Mohite OS, Nuhamunada M, Xu Z, Murphy R, Bodawatta K, Poulsen M, Abdulla MH, Sonnenschein EC, Weber T, Kovács ÁT 2024.  Expanding the genome information on Bacillales for biosynthetic gene cluster discovery. Scientific Data 11:1267 https://doi.org/10.1038/s41597-024-04118-x

Svendsen PB, Henriksen NNSE, Jarmusch SA, Andersen AJC, Smith K,  Selsmark  MW, Zhang SD, Schostag MD, Gram L 2024. Co-existence of two antibiotic-producing marine bacteria: Pseudoalteromonas piscicida reduce gene expression and production of the antibacterial compound, tropodithietic acid, in Phaeobacter sp. Applied and Environmental Microbiology 90:e00588-24 https://doi.org/10.1128/aem.00588-24

Sørensen MB, Andersen MR, Siewertsen MM, Bro R, Strube ML, Gotfredsen CH 2024. NMR-Onion - a transparent multi-model based 1D NMR deconvolution algorithm. Heliyon 10:e36998 https://doi.org/10.1016/j.heliyon.2024.e36998

Sørensen MB, Møller JK, Strube ML, Gotfredsen CH 2024. Designing optimal experiments in metabolomics. Metabolomics 20:69 https://doi.org/10.1007/s11306-024-02122-1

Xu X, Pioppi A, Kiesewalter HT, Strube ML, Kovács ÁT 2024. Disentangling the potential factors defining Bacillus subtilis abundance in natural soils, Environmental Microbiology. 26:e16693 https://doi.org/10.1111/1462-2920.16693

Bech PK, Zhang SD, Henriksen NNSE, Bentzon-Tilia M, Strube ML, Gram L 2023 The potential to produce tropodithietic acid by Phaeobacter inhibens affects the assembly of microbial biofilm communities in natural seawater. npj Biofilms and Microbiomes 9:12. https://doi.org/10.1038/s41522-023-00379-3

Blin K, Shaw S, Medema MH, Weber T 2023. The antiSMASH database version 4: additional genomes and BGCs, new sequence-based searches and more. Nucleic Acid Research. 52:D586-D589. https://doi.org/10.1093/nar/gkad984

Blin K, Shaw S, Augustijn HE, Reitz ZL, Biermann F, Alanjary M, Fetter A, Terlouw BR, Metcalf WW, Helfrich EJN, van Wezel GP, Medema MH, Weber T 2023. antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation. Nucleic Acid Research. 51:W46-W50. https://doi.org/10.1093/nar/gkad344

Bradley SA, Lehka BJ, Hansson FG, Adhikari KB, Rago D, Rubaszka P, Haidar AK, Chen L, Hansen LG, Gudich O, Giannakou K, Lengger B, Gill RT, Nakamura Y, Dugé de Bernonville T, Koudounas K, Romero-Suarez D, Ding L, Qiao Y, Frimurer TM, Petersen AA, Beasseau S, Kumar S, Gautron N, Melin C, Marc J, Jeanneau R, O’Connor SE, Courdavault V, Keasling JD, Zhang J, Jensen MK 2023. Biosynthesis of natural and halogenated plant monoterpene indole alkaloids in yeast. Nature Chemical Biology. 19:1551-1560. https://doi.org/10.1038/s41589-023-01430-2

Buenrostro-Munoz, Jarmusch SA, Souza V, Martinez-Cardenas A, Fjardo-Hernandez CA, Yeverino IR, Eguiarte LE, Figueroa M 2023. Metabolomic Diversity in Microbial Mats Under Different Environmental Conditions: A Tool to Test Microbial Ecosystem Chemical Change. Chemistry and Biodiversity. 21:e202300829. https://doi.org/10.1002/cbdv.202300829

Droumpali A, Liu Y, Ferrer-Florensa X, Sternberg C, Dimaki M, Andersen AJC, Strube ML, Kempen PJ, Gram L, Taboryski R 2023. Biosynthesis Enhancement of Tropodithietic Acid (TDA) Antibacterial Compound through Biofilm Formation by Marine Bacteria Phaeobacter inhibens on Micro-Structured Polymer Surfaces RCS Advances. 13:33159. https://doi.org/10.1039/d3ra05407a

Gallegos-Monterrosa R, Kovács ÁT 2023. Phenotypic plasticity: The role of a phosphatase family Rap in the genetic regulation of Bacilli. Molecular Microbiology 120:20-31. https://doi.org/10.1111/mmi.15060

Garcias-Bonet N, Roik A, Dungan A, Villela H, Garcia F, Quigley K, Sweet M, Berg G, Hoj L, Bourne DG, Ushijima B, Sogin M, Gram L, Duarte G, Hirt H, Smalla K, Rosado A, Carvalho S, Vega-Thurber R, Ziegler M, Tierney B, Mason CE, Blackall L, van Oppen MJH, Voolstra CR, Peixoto R 2023. Horizon scanning the application of probiotics for wildlife. Trends in Microbiology 32:525-269. https://doi.org/10.1016/j.tim.2023.08.012

Geers AU, Strube ML, Bentzon-Tilia M 2023. Small spatial scale drivers of secondary metabolite biosynthetic diversity in environmental microbiomes. mSystems 8:e00724-22. https://doi.org/10.1128/msystems.00724-22

Hu G, Wang Y,  Blake C, Nordgaard M, Liu X, Wang B, Kovács ÁT 2023. Parallel genetic adaptation of Bacillus subtilis to different plant species. Microbial Genomics 9:14. https://doi.org/10.1099/mgen.0.001064

Hu G, Wang Y, Liu X, Strube ML, Wang B, Kovács AT 2023/ Species and condition dependent mutational spectrum in experimentally evolved biofilms of Bacilli. mSystems 8:e00548-23. https://doi.org/10.1128/msystems.00548-23 

Khatri S, Sazinas P, Strube M, Ding L, Dubey S, Shivay YS, Sharma S, Jelsbak L 2023. Pseudomonas is a key player in conferring disease suppressiveness in organic farming. Plant Soil 503:85-104 https://doi.org/10.1007/s11104-023-05927-6. NB issue published in 2024

Lindqvist LL, Jarmusch SA, Sonnenschein EC, Strube ML, Kim J, Nielsen MW, Kempen PJ, Schoof EM, Zhang SD, Gram L 2023. Tropodithietic Acid, a Multifunctional Antimicrobial, Facilitates Adaption and Colonization of the Producer, Phaeobacter piscinae. mSphere 8:e00517-22. https://journals.asm.org/doi/10.1128/msphere.00517-22

Lozano-Andrade CN, Nogueira CG, Wibowo M, Kovács ÁT 2023. Establishment of a transparent soil system to study Bacillus subtilis chemical ecology. ISME Communications. 3:110. https://doi.org/10.1038/s43705-023-00318-5

Lyng M, Kovács ÁT 2023. Frenemies of the soil: Bacillus and Pseudomonas interspecies interactions. Trends in Microbiology 31:845-857. https://doi.org/10.1016/j.tim.2023.02.003

Murphy R, Strube ML 2023. RibDif2: Expanding amplicon analysis to full genomes. Bioinformatics Advances 3:vbad11. https://doi.org/10.1093/bioadv/vbad111 

Shaaban M, Abdel-Razek AS, Previtali V, Clausen MH, Gotfredsen CH, Laatsch H, Ding L 2023. Sulochrins and alkaloids from a fennel endophyte Aspergillus sp. FVL2, Natural Product Research 37:1310-1320. https://doi.org/10.1080/14786419.2021.2005054

Su J, Wang Y, Bai M, Peng T, Li H, Xu HJ, Guo G, Bai H, Rong N, Sahu SK, He H, Liang X, Jin C, Liu W, Strube ML, Gram L, Li Y, Wang E, Liu H, Wu H 2023. Soil conditions and plant microbiome boost the accumulation of monoterpenes in the fruit of Citrus reticulata ‘Chachi’. Microbiome 11:61. https://doi.org/10.1186/s40168-023-01504-2

Sun X, Xie J, Zheng D, Wang W, Xia R, Wang W, Xun W, Huang Q, Zhang R, Kovács ÁT, Xu Z, Qirong S 2023. Metabolic interactions affect the biomass of synthetic bacterial biofilm communities. mSystems 8:e01045-23. https://doi.org/10.1128/msystems.01045-23.

Yang Z, Strøbech E, Qiao Y, Konakall NG, Harris P, Peschel G, Agler-Rosenbaum M, Weber T, Andreasson E, Ding L 2023 Streptomyces alleviate abiotic stress in plant by producing pteridic acids. Nature Communications 14:7398. https://doi.org/10.1038/s41467-023-43177-3 

Xu A, Nielsen LJD, Song L, Maróti G, Strube ML, Kovács ÁT 2023. Enhanced specificity of Bacillus metataxonomics using a tuf-targeted amplicon sequencing approach. ISME Communications 3:126. https://doi.org/10.1038/s43705-023-00330-9

Christiansen JV, Isbrandt T, Asferg R, Jarmusch SA, Larsen TO, Frisvad JC 2022. Phoenicin Switch: Discovering the Trigger for Radical Phoenicin Production in Multiple Wild-Type Penicillium Species. Applied and Environmental Microbiology 88:16. https://doi.org/10.1128/aem.00302-22

Ardalani H, Anam S, Kromphardt KJK, Staerk D, Kongstad KT 2021. Coupling microplate‐based antibacterial assay with liquid chromatography for high‐resolution growth inhibition profiling of crude extracts: validation and proof‐of‐concept study with Staphylococcus aureus. Molecules 26, 6. https://doi.org/10.3390/molecules26061550

Arnaouteli S, Bamford NC,  Stanley-Wall NR, Kovács ÁT 2021 Bacillus subtilis biofilm formation and social interactions. Nature Reviews Microbiology. 19. https://doi.org/10.1038/s41579-021-00540-9

Blin K,  Shaw S, Kautsar SA. Medema MH, Weber T 2021 The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes. Nucleic Acids Research. 49. https://doi.org/10.1093/nar/gkaa978

Blin K, Shaw S, Kloosterman AM, Charlop-Powers Z, van Wezel GP, Medema MH, Weber T 2021. antiSMASH 6.0: improving cluster detection and comparison capabilities. Nucleic Acids Research. 49 https://doi.org/10.1093/nar/gkab335

Borre I, Sonnenschein EC.2021. Draft genome sequences of nine environmental bacterial isolates colonizing plastic. In: Microbiology Resource Announcements. 10, 11. https://doi.org/10.1128/MRA.01485-20

Buijs Y, Zhang S, Jørgensen KM, Isbrandt T, Larsen TO, Gram L 2021 Enhancement of antibiotic production by co-cultivation of two antibiotic producing marine Vibrionaceae strains. FEMS Microbiology Ecology 97. https://doi.org/10.1093/femsec/fiab041.

Ding L, Zhang  SD,  Haidar A.K.,  Bajimaya M,  Guo Y,  Larsen TO, Gram L 2021 Polycyclic tetramate macrolactams–a group of natural bioactive metallophores. Frontiers in Chemistry.  9: 772858. https://doi.org/10.3389/fchem.2021.772858

Dragoš A, Andersen AJC, Lozano-Andrade CN, Kempen PJ, Kovács ÁT, Strube ML 2021. Phages carry interbacterial weapons encoded by biosynthetic gene clusters. Current Biology. 31, 1-11. https://doi.org/10.1016/j.cub.2021.05.046

Dragoš A, Priyadarshini B, Hasan Z, Strube ML, Kempen PJ, Maróti G, Kaspar C, Bose B, Burton BM, Bischofs IB, Kovács ÁT 2021 Pervasive prophage recombination occurs during evolution of spore-forming Bacilli. ISME Journal. 15. https://doi.org/10.1038/s41396-020-00854-1

Eelderink-Chen Z, Bosman J, Sartor F, Dodd A, Kovács ÁT, Merrow M 2021 A circadian clock in a nonphotosynthetic prokaryote. Science Advances. 7. https://doi.org/10.1126/sciadv.abe2086

Hansen J, Melchiorsen J, Mateiu RV, Ciacotich N, Gram L, Sonnenschein EC 2021 Effect of polymer type on the colonization of plastic pellets by marine bacteria. FEMS Microbiology Letters. 368. https://doi.org/10.1093/femsle/fnab026

Hansen ML, He Z, Wibowo M, Jelsbak L  2021 A whole-cell biosensor for detection of 2,4-diacetylphloroglucinol (DAPG)-producing bacteria from grassland soil. Applied and Environmental Microbiology. 87, 3. https://doi.org/10.1128/AEM.01400-20

Jarmusch, SA, van der Hooft, JJJ, Dorrestein P, Jarmusch AK  2021 Advancements in Capturing and Mining Mass Spectrometry Data Are Transforming Natural Products Research. Natural Product Reports.38. https://doi.org/10.1039/D1NP00040C

Kautsar SA, Blin K, Shaw S, Weber T, Medema MH 2021 BiG-FAM: the biosynthetic gene cluster families database. Nucleic Acids Research. 49. https://doi.org/10.1093/nar/gkaa812

Kiesewalter HT, Lozano-Andrade CN, Wibowo M, Strube ML, Maróti G, Snyder D, Jørgensen TS, Larsen TO, Cooper VS, Weber T, Kovács ÁT 2021 Genomic and chemical diversity of Bacillus subtilis secondary metabolites against plant pathogenic fungi. mSystems. 6, 1. https://doi.org/10.1128/mSystems.00770-20

Lauritsen JG, Hansen ML, Bech PK, Jelsbak L, Gram L, Strube ML 2021 Identification and differentiation of Pseudomonas species in field samples using an rpoD amplicon sequencing methodology. mSystems. 6, 4. https://doi.org/10.1128/mSystems.00704-21

Li L, Wang H, Wang S, Xu Y, Liang H, Liu H, and Sonnenschein EC 2021The Draft Genome of the Centric Diatom Conticribra weissflogii (Coscinodiscophyceae, Ochrophyta). Protist. 172 (5-6): 125845 (1-6). https://doi.org/10.1016/j.protis.2021.125845

Lozano-Andrade CN, Strube ML, Kovács ÁT  2021 Complete Genome Sequences of Four Soil-Derived Isolates for Studying Synthetic Bacterial Community Assembly. Microbiology Resource Announcements. 10, 46. https://doi.org/10.1128/MRA.00848-21

Sonnenschein EC, Jiménez G, Castex M, Gram L 2021 The Roseobacter-group bacterium Phaeobacter as safe probiotic solution for aquaculture. Applied Environmental Microbiology. 87, 5. https://doi.org/10.1128/AEM.02581-20

Steinke K, Mohite OS, Weber T, Kovács ÁT 2021 Phylogenetic distribution of secondary metabolites in the Bacillus subtilis species complex. mSystems. 6, 2. https://doi.org/10.1128/mSystems.00057-21

Strube ML 2021 RibDif: can individual species be differentiated by 16S sequencing?. Bioinformatics Advances. 1, 1. https://doi.org/10.1093/bioadv/vbab020

Visagie CM, Frisvad JC, Visagie A, Houbraken, J, Seifert KA, Samson RA, Jacobs K 2021 A re-evaluation of Penicillium section Canescentia, including the description of five new species. Persoonia. 46. https://doi.org/10.3767/persoonia.2021.46.06

Wang X, Isbrand T, Christensen EØ, Melchiorsen J,  Larsen TO,  Zhang S-D, Gram L  2021 Identification and verification of the prodigiosin biosynthetic gene cluster (BGC) in Pseudoalteromonas rubra S4059. Microbiology Spectrum. 9, 2. https://doi.org/10.1128/Spectrum.01171-21

Wang X, Isbrandt T, Strube ML, Paulsen SS, Nielsen MW, Buijs Y, Schoof EM, Larsen TO, Gram L, Zhang SD 2021 Chitin degradation machinery and secondary metabolite profiles in the marine bacterium Pseudoalteromonas rubra S4059. Marine Drugs 19. https://doi.org/10.3390/md19020108

Wang X, Subko K, Kildgaard S, Frisvad JC and Larsen TO 2021 Mass Spectrometry-Based Network Analysis Reveals New Insights Into the Chemodiversity of 28 Species in Aspergillus section Flavi. Frontiers in Fungal Biology.  2: 719420 (1-13). https://doi.org/10.3389/ffunb.2021.719420

Wang Y, Shuilin L, Gai Y, Liu G, Jin T, Liu H, Gram L, Strube ML, Fan G, Sahu S, Liu S, Gan S, Xie ZZ, Kong LF, Zhang P, Liu X, Wang D 2021 Metagenomic analysis reveals community structure and their metabolic potential for nitrogen acquisition in the oligotrophic surface waters of the Indian Ocean. Frontiers Microbiology. 12. https://doi.org/10.3389/fmicb.2021.518865

Zhang SD, Isbrandt T, Lindqvist LL, Larsen TO, Gram L  2021 Holomycin, an Antibiotic Secondary Metabolite, Is Required for Biofilm Formation by the Native Producer Photobacterium galatheae S2753. Applied Environmental Microbiology. 87. https://doi.org/10.1128/AEM.00169-21