Publications

Supported by DNRF 137

 

Preprints

Hansen, M.L. ; Denes, Z. ; Jarmusch, S.A. ; Wibowo, M. ; Lozano-Andrade, C.N. ; Kovacs, A.T. ; Strube, M.L. ; Andersen, A.J.C. ; Jelsbak, L.. / Resistance towards and biotransformation of Pseudomonas-produced secondary metabolites during community invasion. In: bioRχiv. 2023.  https://doi.org/10.1101/2023.06.20.545698

Hu, G. ; Wang ,Y. ; Blake, C. ; Nordgaard, M. ; Liu, X. ; Wang, B. and Kovács, Á.T.. / Parallel genetic adaptation of Bacillus subtilis to different plant species. In: bioRχiv. 2023. https://doi.org/10.1101/2023.03.17.533125

Hu, G. ; Wang, Y. ; Liu, X. ;  Strube, M.L. ;  Wang, B. and Kovács, A.T.. / Species and condition dependent mutational spectrum in experimentally evolved biofilms of Bacilli. In: bioRχiv. 2023. https://doi.org/10.1101/2022.12.07.519423

Jarmusch, A.K. ; Aron, A.T. ; Petras, D. ; Phelan, V.V. ; Bittremieux, W. ; Acharya, D.D. ; Ahmed, M.M.A. ; Bauermeister, A. ; Bertin, M.J. ; Boudreau, P.D. ; Borges, R.M. ; Bowen, B.P. ; Brown, C.J. ; Chagas, F.O. ; Clevenger, K.D. ; Correia, M.S.P. ; Crandall, W.J. ; Crüsemann, M. ; Damiani, T. ; Fiehn, O. ; Garg, N. ; Gerwick, W.H. ; Gilbert, J.R. ; Globisch, D. ; Gomes, P.W.P. ; Heuckeroth, S. ; James, C.A. ; Jarmusch, S.A. ; Kakhkhorov, S.A. ; Kang, K.B. ; Kersten, R.D. ; Kim, H. ; Kirk, R.D. ; Kohlbacher, O. ; Kontou, E.E. ; Liu, K. ; Lizama-Chamu, I. ; Luu, G.T, ; Knaan, T.L. ; Marty, M.T. ; McAvoy, A.C. ; McCall, L.I. ; Mohamed, O.G. ; Nahor, O. ; Niedermeyer, T.H.J. ; Northen, T.R. ; Overdahl, K.E. ; Pluskal, T. ; Rainer, J. ; Reher, R. ; Rodriguez, E. ; Sachsenberg, T.T. ; Sanchez, L.M. ; Schmid, R. ; Stevens, C. ; Tian, Z. ; Tripathi, A. ; Tsugawa, H. ; Nishida, K. ; Matsuzawa, Y. ; van der Hooft, J.J.J. ; Vicini, A. ; Walter, A. ; Weber, T. ; Xiong, Q. ; Xu, T. ; Zhao, H.N. ; Dorrestein, P.C. and Wang, M.. / A Universal Language for Finding Mass Spectrometry Data Patterns. In: bioRχiv. 2023. https://doi.org/10.1101/2022.08.06.503000

Lozano-Andrade, C.N. ; Nogueira, C.G. ; Wibowo, M. and Kovács, ÁT.. / Establishment of a transparent soil system to study Bacillus subtilis chemical ecology. In: bioRχiv. 2023. https://doi.org/10.1101/2022.01.10.475645

Lyng, M. ; Jørgensen, J.P.B. ; Schostag, M.D. ; Jarmusch, S.A. ; Aguilar, D.K.C. ; Lozano-Andrade, C.N. ; Kovács, Á.T.. / Competition for iron shapes metabolic antagonism between Bacillus subtilis and Pseudomonas. In: bioRχiv. 2023. https://doi.org/10.1101/2023.06.12.544649

Lyng, M. ; Þórisdóttir, B. ; Sveinsdóttir, S.H. ; Hansen, M.L. ; Maróti, G. ; Jelsbak, L. ; Kovács, Á.T.. / Taxonomy of Pseudomonas spp determines interactions with Bacillus subtilis. In: bioRχiv. 2023. https://doi.org/10.1101/2023.07.18.549276

Maleckis, M. ; Wibowo, M. ; Gren, T. ; Jarmusch, S.A. ; Sterndorff, E.B. ; Booth, T. ; Henriksen, N.N.S.E. ; Whitford, C.M. ; Jiang, X. ; Jørgensen, T.S ; Ding, L. and Weber, T.. / Biosynthesis of the azoxy compound azodyrecin from Streptomyces mirabilis P8-A2. In: bioRχiv. 2023. https://doi.org/10.1101/2023.10.13.562208

Richter, A. ; Blei, F. ; Hu, G. ; Schwitalla, J.W. ; Lozano-Andrade, C.N. ; Jarmusch, S.A. ; Wibowo, M. ; Kjeldgaard, B. ; Surabhi, S. ; Jautzus,T. ; Phippen, C.B.W. ; Tyc , O. ; Arentshorst, M. ; Wang, Y. ; Garbeva, P. ; Larsen, T.O. ; Ram, A.F.J. ; van den Hondel, C.A.M. ; Maróti, G. and Kovács, Á.T.. / Enhanced niche colonisation and competition during bacterial adaptation to a fungus.  In: bioRχiv. 2023. https://doi.org/10.1101/2023.03.27.534400

Sun, X. ; Xie J ; Zheng, D. ; Wang, W. ; Xia, R. ; Zhang, R. ; Kovács, Á.T. ; Zhihui, X. and Qirong, S.. / Keystone species determine the productivity of synthetic microbial biofilm communities. In: bioRχiv. 2023. https://doi.org/10.1101/2022.01.23.477386

Xu, X. ; Nielsen, L.J.D. ; Song, L. ; Maróti, G. ; Strube, M.L. and Kovács , Á.T.. / Enhanced specificity of Bacillus metataxonomics using a tuf-targeted amplicon sequencing approach. In: bioRχiv. 2023. https://doi.org/10.1101/2023.05.28.542609.

Yang, Z. ; Strøbech, E. ; Qiao, Y. ; Konakall, N.G. ; Harris, P. ; Peschel, G. ; Agler-Rosenbaum, M. ; Weber, T. ; Andreasson, E. and Ding, L.. / Streptomyces alleviate abiotic stress in plant by producing pteridic acids. In: bioRχiv. 2023. https://doi.org/10.1101/2022.11.18.517137

2023 Publications

Bech, P.K. ; Zhang, S.D. ; Henriksen, N.N.S.E. ; Bentzon-Tilia, M. ; Strube, M.L. and Gram, L.. /  The potential to produce tropodithietic acid by Phaeobacter inhibens affects the assembly of microbial biofilm communities in natural seawater. In: npj Biofilms and Microbiomes. 2023 ; Vol. 9, article number: 12. https://doi.org/10.1038/s41522-023-00379-3

Blin, K. ; Shaw, S. ; Augustijn, H.E. ; Reitz, Z.L. ; Biermann, F. ; Alanjary, M. ; Fetter, A. ; Terlouw, B.R. ; Metcalf, W.W. ; Helfrich, E.J.N. ; van Wezel, G.P. ; Medema, M.H. ; Weber, T.. / antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation. In: Nucleic Acid Research. 2023 ; Vol.51. https://doi.org/10.1093/nar/gkad344

Bradley, S.A ; Lehka, B.J. ; Hansson, F.G. ; Adhikari, K.B. ; Rago, D. ; Rubaszka, P. ; Haidar, A.K. ; Chen, L. ; Hansen, L.G. ; Gudich, O. ; Giannakou, K. ; Lengger, B. ; Gill, R.T. ; Nakamura, Y. ; Dugé de Bernonville, T. ; Koudounas, K. ; Romero-Suarez, D. ; Ding, L. ; Qiao, Y. ; Frimurer, T.M. ; Petersen, A.A. ; Beasseau, S. ; Kumar, S. ; Gautron, N. ; Melin, C. ; Marc, J. ; Jeanneau, R. ; O’Connor, S.E. ; Courdavault, V. ; Keasling, J.D. ; Zhang, J. and Jensen, M.K.. / Biosynthesis of natural and halogenated plant monoterpene indole alkaloids in yeast. Accepted In: Nature Chemical Biology. 2023

Buenrostro-Munoz ; Jarmusch S.A. ; Souza V. ; Martinez-Cardenas A. ; Fjardo-Hernandez C.A. ; Yeverino I.R. ; Eguiarte L.E. and Figueroa M.. / Metabolomic Diversity in Microbial Mats Under Different Environmental Conditions: A Tool to Test Microbial Ecosystem Chemical Change. Published online In: Chemistry and Biodiversity. 2023. https://doi.org/10.1002/cbdv.202300829

Gallegos-Monterrosa, R. and Kovács, Á.T.. / Phenotypic plasticity: The role of a phosphatase family Rap in the genetic regulation of Bacilli. In: Molecular Microbiology. 2023 ; Vol. 120, Issue 1. https://doi.org/10.1111/mmi.15060

Garcias-Bonet, N. ; Roik, A. ; Dungan, A. ; Villela, H. ; Garcia, F. ; Quigley, K. ; Sweet, M. ; Berg, G. ; Hoj, L. ; Bourne, D.G. ; Ushijima, B. ; Sogin, M. ; Gram, L. ; Duarte, G. ; Hirt, H. ; Smalla, K. ; Rosado, A. ; Carvalho, S. ; Vega-Thurber, R. ; Ziegler, M. ; Tierney, B. ; Mason, C.E. ; Blackall, L. ; van Oppen, M.J.H. ; Voolstra, C.R. and Peixoto, R. / Horizon scanning the application of probiotics for wildlife. Published online In: Trends in Microbiology. 2023. https://doi.org/10.1016/j.tim.2023.08.012

Geers, A.U. ; Strube, M.L. and Bentzon-Tilia, M.. / Small spatial scale drivers of secondary metabolite biosynthetic diversity in environmental microbiomes. In: mSystems. 2023 ; Vol. 8, No. 2. https://doi.org/10.1128/msystems.00724-22

Hu, G. ; Wang ,Y. ; Blake, C. ; Nordgaard, M. ; Liu, X. ; Wang, B. and Kovács, Á.T.. / Parallel genetic adaptation of Bacillus subtilis to different plant species. In: MICROBIAL GENOMICS. 2023; Vol. 9, Issue 7. https://doi.org/10.1099/mgen.0.001064

Hu, G. ; Wang, Y. ; Liu, X. ; Strube, M.L. ; Wang, B. and Kovács, A.T.. / Species and condition dependent mutational spectrum in experimentally evolved biofilms of Bacilli. Accepted In: mSystems. 2023.

Khatri, S. ; Sazinas, P. ; Strube, M.L. ; Ding, L. ; Dubey, S. ; Shivay, Y.S. ; Sharma, S. and Jelsbak, L.. / Pseudomonas is a key player in conferring disease suppressiveness in organic farming. Published online In: Plant and Soil. 2023. https://doi.org/10.1007/s11104-023-05927-6 

Lindqvist, L.L. ; Jarmusch, S.A. ; Sonnenschein, E.C. ; Strube, M.L. ; Kim, J. ; Nielsen, M.W. ; Kempen, P.J. ; Schoof, E.M. ; Zhang, S.D. and Gram, L.. / Tropodithietic Acid, a Multifunctional Antimicrobial, Facilitates Adaption and Colonization of the Producer, Phaeobacter piscinae. In: mSphere. 2023 ; Volume 8, Issue 1, e00517-22. https://journals.asm.org/doi/10.1128/msphere.00517-22

Lozano-Andrade, C.N. ; Nogueira, C.G. ; Wibowo, M. and Kovács, Á.T.. / Establishment of a transparent soil system to study Bacillus subtilis chemical ecology. Published online In: ISME Communications. 2023. https://doi.org/10.1038/s43705-023-00318-5

Lyng, M. and Kovács, Á.T.. / Frenemies of the soil: Bacillus and Pseudomonas interspecies interactions. In: Trends in Microbiology. 2023; Vol. 31, No. 8. https://doi.org/10.1016/j.tim.2023.02.003

Murphy, R. and Strube, M.L.. / RibDif2: Expanding amplicon analysis to full genomes. Accepted In: Bioinformatics Advances. 2023.

Su, J. ; Wang, Y. ; Bai, M. ; Peng, T. ; Li, H. ; Xu, H.J. ; Guo, G. ; Bai, H. ; Rong, N. ; Sahu, S.K. ; He, H. ; Liang, X. ; Jin, C. ; Liu, W. ; Strube, M.L. ; Gram, L. ; Li, Y. ; Wang, E. ; Liu, H. and Wu, H.. / Soil conditions and plant microbiome boost the accumulation of monoterpenes in the fruit of Citrus reticulata ‘Chachi’. In: Microbiome. 2023 ; Vol 11, 61. https://doi.org/10.1186/s40168-023-01504-2

Sun, X. ; Xie, J. ; Zheng, D. ; Wang, W. ; Xia, R. ; Wang, W. ; Xun, W. ; Huang, Q. ; Zhang, R. ; Kovács, Á.T. ; Xu, Z. and Qirong, S.. / Metabolic interactions affect the biomass of synthetic bacterial biofilm communities. Accepted In: mSystems. 2023

Yang, Z. ; Strøbech, E. ; Qiao, Y. ; Konakall, N.G. ; Harris, P. ; Peschel, G. ; Agler-Rosenbaum, M. ; Weber, T. ; Andreasson, E. and Ding, L.. / Streptomyces alleviate abiotic stress in plant by producing pteridic acids. Accepted In: Nature Communications. 2023.

2022 Publications

Christiansen, J.V. ; Isbrandt, T. ; Asferg, R. ; Jarmusch, S.A. ; Larsen, T.O. ; Frisvad, J.C.. / Phoenicin Switch: Discovering the Trigger for Radical Phoenicin Production in Multiple Wild-Type Penicillium Species. In: Applied and Environmental Microbiology. 2022 ; Vol. 88: 16. https://doi.org/10.1128/aem.00302-22

Clemmensen, S.E. ; Kromphardt, K.J.K. ; Frandsen, R.J.N.. / Marker-free CRISPR-Cas9 based genetic engineering of the phytopathogenic fungus, Penicillium expansum. In: Fungal Genetics and Biology. 2022 ; Vol. 160: 103689. https://doi.org/10.1016/j.fgb.2022.103689

Geers, A.U. ; Buijs, Y. ; Strube, M.L. ; Gram, L .; Bentzon-Tilia, M.. / The natural product biosynthesis potential of the microbiomes of Earth – bioprospecting for novel anti-microbial agents in the meta-omics era. In: Computational and Structural Biotechnology Journal. 2022 ; Vol. 20: 343-352. https://doi.org/10.1016/j.csbj.2021.12.024

Hansen, M.L. ; Wibowo, M. ; Jarmusch, S.A. ; Larsen, T.O. ; Jelsbak, L.. / Sequential interspecies interactions affect production of antimicrobial secondary metabolites in Pseudomonas protegens DTU9.1. Published online In: ISME Journal. 2022. https://doi.org/10.1038/s41396-022-01322-8

Henriksen, N.N.S.E. ; Schostag, M.D. ; Balder, S.R. ; Bech, P.K. ; Strube, M.L. ; Sonnenschein, E. ; Gram, L.. / The ability of Phaeobacter inhibens to produce tropodithietic acid influences the community dynamics of a microalgal microbiome. Published on line In: ISME Communications. 2022. https://doi.org/10.1038/s43705-022-00193-6

Henriksen, N.N.S.E. ; Lindqvist, L.L. ; Wibowo, M. ; Sonnenschein, E.C. ; Bentzon-Tilia, M. ; Gram, L.. / Role is in the eye of the beholder – the multiple functions of the antibacterial compound tropodithietic acid produced by marine Rhodobacteraceae. In: FEMS Microbiology Review. 2022 ; Vol. 46(3): fuac007. https://doi.org/10.1093/femsre/fuac007

Jakab, Á. ; Kovács,  F. ; Balla, N. ; Tóth, Z. ; Ragyák, Á. ; Sajtos, Z. ; Csillag, K. ; Nagy-Köteles, C. ; Nemes, D. ;  Pócsi, I. ; Majoros, L. ; Kovács, Á.T. ; Kovács, R.. / Physiological and transcriptional profiling of surfactin exerted antifungal effect against Candida albicans. In: Biomedicine & Pharmacotherapy. 2022 ; Vol. 152: 113220. https://doi.org/10.1016/j.biopha.2022.113220

Jautzus, T. ; van Gestel, J. ; Kovács , Á.T.. / Complex extracellular biology drives surface competition in Bacillus subtilis. In: ISME Journal. 2022 ; Vol. 16: 2320-2328. https://doi.org/10.1038/s41396-022-01279-8

Khatri, S. ; Dubey, S. ; Shivay, Y.S. ; Jelsbak, L. ; Sharma S.. /Organic farming induces changes in bacterial community and disease suppressiveness against fungal phytopathogens. In: Applied Soil Ecology. 2022 ; Vol.181 (2023) 104658. https://doi.org/10.1016/j.apsoil.2022.104658

Kjeldgaard, B. ; Neves, A.R. ; Fonseca, C. ;  Kovács, Á.T. ; Domínguez-Cuevas, P.. / Quantitative high-throughput screening methods designed for identification of bacterial biocontrol strains with antifungal properties. In: Microbiology Spectrum. 2022 ; Vol. 10, Issue 2, e01433-21. https://doi.org/10.1128/spectrum.01433-21

Lin, Y. ; Xu, X. ; Maróti, G. ; Strube, M.L. ; Kovács, Á.T.. / Adaptation and phenotypic diversification of Bacillus thuringiensis biofilm are accompanied by fuzzy spreader morphotypes. In: NPJ Biofilms and Microbiomes. 2022 ; Vol. 8: 27. https://doi.org/10.1038/s41522-022-00292-1

Nordgaard, M. ; Blake, C. ; Maróti, G. ; Strube, M.L. ; Kovács, Á.T.. / Experimental evolution of Bacillus subtilis on Arabidopsis thaliana roots reveals fast adaptation and improved root colonization. In: iScience. 2022 ; Vol. 25(6): 104406. https://doi.org/10.1016/j.isci.2022.104406

Peixoto, R. ; Voolstra, C.R. ; Sweet, M. ; Duarte, C. ; Carvalho, S. ; Villela, H. ; Lunshof, J.E. ; Gram, L. ; Woodhams, D.C. ; Walter, J. ; Roik, A. ; Hentschel, U. ; Vega, Thurber R. ; Daisley, B. ; Ushijima, B. ; Daffonchio, D. ; Costa, R. ; Keller-Costa, T. ; Bowman, J. ; Rosado, A.S. ; Reid, G. ; Mason, C. ; Walke, J.B. ; Thomas, T. ; Berg, G.. / Harnessing the microbiome to prevent global biodiversity loss. In: Nature Microbiology. 2022 ; Vol. 7: 1726-1735.https://doi.org/10.1038/s41564-022-01173-1

Perini, L. ; Gostinčar, C. ; Likar, M. ; Frisvad, J.C. ; Kostanjšek, R. ; Nicholes, M. ; Williamson, C. ; Anesio, A.M. ; Zalar, P. ; Gunde-Cimerman, N.. / Interactions of Fungi and Algae from the Greenland Ice Sheet. Published online In: Environmental Microbiology. 2022. https://link.springer.com/article/10.1007/s00248-022-02033-5

Sanchez-Navarro, R. ; Nuhamunada, M. ; Mohite, O. ; Wasmund, K. ; Albertsen, M. ; Gram, L. ; Nielsen, P.H. ; Weber, T. ; Singleton, C.. / Long-read MAGs improve identification of novel complete biosynthetic gene clusters in a complex microbial activated sludge ecosystem. Accepted In: mSystems. 2022.

Schostag, M.D. ; Gobbi, A. ; Fini, M.N. ; Ellegaard-Jensen, L. ; Aamand, J. ; Hansen, L.H. ; Muff, J. ; Albers, C.N.. / Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue. In: Water Research. 2022 ; Vol. 216: 118352. https://doi.org/10.1016/j.watres.2022.118352

Shaaban, M. ; Abdel-Razek, A.S. ; Previtali, V. ; Hartvig, C.M. ; Gotfredsen, C.H. ; Laatsch, H. ; Ding, L.. / Sulochrins and alkaloids from a fennel endophyte Aspergillus sp. FVL2. Published online In: Natural Product Research. 2022. https://doi.org/10.1080/14786419.2021.2005054

Sun, X. ; Xu, Z. ; Xie, J. ; Thomsen, V.H. ; Tan, T. ; Zheng, D. ; Strube, M.L. ; Dragos, A. ; Shen, Q. ; Zhang, R. ; Kovács, Á.T.. / Bacillus velezensis stimulates resident rhizosphere Pseudomonas stutzeri for plant health through metabolic interactions. In: ISME Journal. 2022 ; Vol.16(3): 774–787. https://doi.org/10.1038/s41396-021-01125-3

Terlouw, B.R. ; Blin, K. ; Navarro-Muñoz, J.C. ; Avalon, N.E. ; Chevrette, M.G. ; Egbert, S. ; Lee, S. ; Meijer, D. ; Recchia, M.J.J. ; Reitz, Z.L. ; van Santen, J. A. ; Selem-Mojica, N. ; Tørring, T. ; Zaroubi, L. ; Alanjary, M. ; Aleti, G. ; Aguilar, C. ; Al-Salihi, S.A.A. ; Augustijn, H.E. ; Avelar-Rivas, J.A. ; Avitia-Domínguez, L.A. ; Barona-Gómez, F. ; Bernaldo-Agüero, J. ; Bielinski, V.A. ; Biermann, F. ; Booth, T.J. ; Bravo, V.J.C. ; Castelo-Branco, R. ; Chagas, F.O. ; Cruz-Morales, P. ; Du, C. ; Duncan, K.R. ; Gavriilidou, A. ; Gayrard, D. ; Gutiérrez-García, K. ; Haslinger, K. ; Helfrich, E.J.N. ; van der Hooft, J. J. J. ; Jati, A.P. ; Kalkreuter, E. ; Kalyvas, N. ; Kang, K.B. ; Kautsar, S. ; Kim, W. ; Kunjapur, A.M. ; Li, Y.-X. ; Lin, G.-M. ; Loureiro, C. ; Louwen, J.J.R. ; Louwen, N.L.L. ; Lund, G. ; Parra, J. ; Philmus, B. ; Pourmohsenin, B. ; Pronk, L.J.U. ; Rego, A. ; Rex, D.A.B. ; Robinson, S. ; Rosas-Becerra, L.R. ; Roxborough, E.T. ; Schorn, M.A. ; Scobie, D.J. ; Singh, K.S. ; Sokolova, N. ; Tang, X. ; Udwary, D. ; Vigneshwari, A. ; Vind, K. ; Vromans, S.P.J.M. ; Waschulin, V. ; Williams, S.E. ; Winter, J.M. ; Witte, T.E. ; Xie, H. ; Yang, D. ; Yu, J. ; Zdouc, M. ; Zhong, Z. ; Collemare, J. ; Linington, R.G. ; Weber, T. ; Medema, M.H.. / MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Published online In: Nucleic Acids Research. 2022. https://doi.org/10.1093/nar/gkac1049

Tesdorpf, J.E. ; Geers, A.U. ; Strube, M.L. ; Gram, L. ; Bentzon-Tilia, M.. / RoseobacterGroup Probiotics Exhibit Differential Killing of Fish Pathogenic Tenacibaculum Species. In: Applied and Environmental Microbiology. 2022 ; Vol. 88, No. 6. https://doi.org/10.1128/aem.02418-21

Wang, X. ; Jarmusch, S.A. ; Frisvad, J.C. ; Larsen, T.O.. / Current status of secondary metabolite pathways linked to their related biosynthetic gene clusters in Aspergillus section Nigri. Published online In: Natural Product Reviews. 2022. https://doi.org/10.1039/D1NP00074H

Wang, X. ; Serrano, R. ; González-Menéndez, V. ; Mackenzie, T.A. ; Ramos, M.C. ; Frisvad, J.C. ; Larsen, T.O.. / A Molecular Networking Based Discovery of Diketopiperazine Heterodimers and Aspergillicins from Aspergillus caelatus. In: Journal of Natural Products. 2022 ; Vol. 85, 1: 25-33. https://doi.org/10.1021/acs.jnatprod.1c00526 

Wang, Y. ; Wang, X. ; Sun, S. ; Jin, C. ; Su, J. ; Wei, J. ; Luo, X. ; Wen, J. ; Wei, T. ; Sahu, S.K. ; Zou, H. ; Chen, H. ; Mu, Z. ; Zhang, G. ; Liu, X. ; Xu, X. ; Gram, L. ; Yang, H. ; Wang, E. ; Liu, H.. / GWAS, MWAS and mGWAS provide insights into precision agriculture based on genotype-dependent microbial effects in foxtail millet. In: Nature Communications. 2022 ; Vol. 13, article number 5913. https://doi.org/10.1038/s41467-022-33238-4 

Zhang, S.D. ; Lindqvist, L.L. ; Isbrandt, T. ; Borre, I. ; Wibowo, M. ; Wennekers, Nielsen M. ; Ding, L. ; Larsen, T.O. ; Gram L.. / Solonamides, a Group of Cyclodepsipeptides, Influence Motility in the Native Producer Photobacterium galatheae S2753. In: Applied and Environmental Microbiology. 2022 ; Vol 88, No. 17. https://doi.org/10.1128/aem.01105-22

2021 Publications

Ardalani, Hamidreza ; Anam, Syariful ; Kromphardt, Kresten J.K. ; Staerk, Dan; Kongstad, Kenneth T. . / Coupling microplate‐based antibacterial assay with liquid chromatography for high‐resolution growth inhibition profiling of crude extracts: validation and proof‐of‐concept study with Staphylococcus aureus. In: Molecules (MDPI). 2021 ; Vol. 26, Issue 6. https://doi.org/10.3390/molecules26061550

Arnaouteli, Sofia ; Bamford, Natalie C. ;  Stanley-Wall, Nicola R. ;  Kovács, Ákos T.. / Bacillus subtilis biofilm formation and social interactions. In: Nature Reviews Microbiology. 2021 ; Vol. 19. https://doi.org/10.1038/s41579-021-00540-9

Blin, Kai ; Shaw, Simon ; Kautsar, Satria A. ; Medema, Marnix H. ; Weber, Tilmann. / The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes. In: Nucleic Acids Research. 2021 ; Vol. 49. https://doi.org/10.1093/nar/gkaa978

Blin, Kai ; Shaw, Simon ; Kloosterman, Alexander M. ; Charlop-Powers, Zach ; van Wezel, Gilles P. ; Medema, Marnix H. ; Weber, Tilmann. / antiSMASH 6.0: improving cluster detection and comparison capabilities. In: Nucleic Acids Research. 2021. https://doi.org/10.1093/nar/gkab335

Borre, Ingrid ;  Sonnenschein, Eva C.. / Draft genome sequences of nine environmental bacterial isolates colonizing plastic. In: Microbiology Resource Announcements. 2021 ; Vol. 10, Issue 11. https://doi.org/10.1128/MRA.01485-20

Buijs, Yannick ; Zhang, Sheng-Da ; Jørgensen, Karen M. ; Isbrandt, Thomas ; Larsen, Thomas O. ;  Gram, Lone. / Enhancement of antibiotic production by co-cultivation of two antibiotic producing marine Vibrionaceae strains. In: FEMS Microbiology Ecology. 2021 ; Vol. 97. https://doi.org/10.1093/femsec/fiab041

Ding, Ling ; Zhang, Sheng-Da. ; Haidar, A.K. ; Bajimaya, M. ; Guo, Y. ; Larsen, Thomas O. and  Gram, Lone. / Polycyclic tetramate macrolactams–a group of natural bioactive metallophores. In: frontiers in Chemistry. 2021 ; Vol 9: 772858. https://doi.org/10.3389/fchem.2021.772858

Dragoš, Anna ; Andersen,  Aaron J.C. ; Lozano-Andrade, Carlos N. ; Kempen, Paul J. ; Kovács, Ákos T. ; Strube, Mikael L.. / Phages carry interbacterial weapons encoded by biosynthetic gene clusters. In: Current Biology. 2021 ; Vol. 31, 1-11. https://doi.org/10.1016/j.cub.2021.05.046

Dragoš, Anna ; Priyadarshini, B ; Hasan, Zahraa ; Strube, Mikael L. ; Kempen, Paul J. ; Maróti, Gergely ; Kaspar, Charlotte ; Bose, Baundauna ; Burton, Briana M. ; Bischofs, Ilka B. ; Kovács, Ákos T.. / Pervasive prophage recombination occurs during evolution of spore-forming Bacilli. In: ISME Journal. 2021 ; Vol. 15. https://doi.org/10.1038/s41396-020-00854-1

Eelderink-Chen, Zheng ; Bosman, Jasper ; Sartor,  Francesca ; Dodd, Antony N. ; Kovács, Ákos T., Merrow, Martha. / A circadian clock in a nonphotosynthetic prokaryote. In: Science Advances. 2021 ; Vol. 7. https://doi.org/10.1126/sciadv.abe2086

Hansen, Josefine ; Melchiorsen, Jette ; Mateiu, Ramona V. ; Ciacotich, Nicole ; Gram, Lone ; Sonnenschein, Eva C.. / Effect of polymer type on the colonization of plastic pellets by marine bacteria. In: FEMS Microbiology Letters. 2021 ; Vol. 368. https://doi.org/10.1093/femsle/fnab026

Hansen, Morten L. ;  He, Zhiming ; Wibowo, Mario ; Jelsbak, Lars. / A whole-cell biosensor for detection of 2,4-diacetylphloroglucinol (DAPG)-producing bacteria from grassland soil. In: Applied and Environmental Microbiology. 2021 ; Vol. 87, Issue 3. https://doi.org/10.1128/AEM.01400-20

Jarmusch, Scott A. ; van der Hooft, Justin J.J. ; Dorrestein, Pieter ; Jarmusch, Alan K.. / Advancements in Capturing and Mining Mass Spectrometry Data Are Transforming Natural Products Research. In: Natural Product Reports. 2021 ; Vol.38. https://doi.org/10.1039/D1NP00040C

Kautsar, Satria A. ; Blin, Kai ; Shaw, Simon ; Weber, Tilmann ; Medema, Marnix H.. / BiG-FAM: the biosynthetic gene cluster families database. In: Nucleic Acids Research. 2021 ; Vol. 49. https://doi.org/10.1093/nar/gkaa812

Kiesewalter, Heiko T. ; Lozano-Andrade, Carlos N.; Wibowo, Mario ; Strube, Mikael L., Maróti, Gergely ; Snyder, Dan ; Jørgensen, Tue S. ; Larsen, Thomas O., Cooper, Vaughn S., Weber, Tilmann ; Kovács, Ákos T.. / Genomic and chemical diversity of Bacillus subtilis secondary metabolites against plant pathogenic fungi. In: mSystems. 2021 ;Vol. 6, Issue 1. https://doi.org/10.1128/mSystems.00770-20

Lauritsen, Jonas G. ; Hansen, Morten L. ; Bech, Pernille K. ; Jelsbak, Lars ; Gram, Lone ; Strube, Mikael L.. / Identification and differentiation of Pseudomonas species in field samples using an rpoD amplicon sequencing methodology. In: mSystems. 2021 ; Vol. 6, Issue 4. https://doi.org/10.1128/mSystems.00704-21

Li, Linzhou ; Wang, Hongli ; Wang, Sibo ;  Xu, Yan ; Liang, Hongping ; Liu, Huan ; Sonnenschein,  Eva C.. /The Draft Genome of the Centric Diatom Conticribra weissflogii (Coscinodiscophyceae, Ochrophyta). In: Protist. 2021 ; Vol.172 (5-6): 125845 (1-6). https://doi.org/10.1016/j.protis.2021.125845

Lozano-Andrade, Carlos N. ;  Strube, Mikael L. and  Kovács, Ákos T.. / Complete Genome Sequences of Four Soil-Derived Isolates for Studying Synthetic Bacterial Community Assembly. In: Microbiology Resource Announcements. 2021 ; Vol.10, Issue 46. https://doi.org/10.1128/MRA.00848-21

Shaaban, Mhamed ; Abdel-Razek, Ahmed S. ; Previtali, Viola ; Hartvig Clausen, Mads ; Gotfredsen, Charlotte H. ; Laatsch, Harmut ; Ding, Ling. / Sulochrins and alkaloids from a fennel endophyte Aspergillus sp. FVL2. In: Natural Product Research. 2021. https://doi.org/10.1080/14786419.2021.2005054

Sonnenschein, Eva C. ; Jiménez, Guillermo ; Castex, Mathieu ; Gram, Lone. / The Roseobacter-group bacterium Phaeobacter as safe probiotic solution for aquaculture. In: Applied Environmental Microbiology. 2021 ; Vol. 87, Issue 5. https://doi.org/10.1128/AEM.02581-20

Steinke, Kat ; Mohite, Omkar S. ; Weber, Tilmann ; Kovács, Ákos T.. / Phylogenetic distribution of secondary metabolites in the Bacillus subtilis species complex. In: mSystems. 2021 ; Vol. 6, Issue 2. https://doi.org/10.1128/mSystems.00057-21

Strube, Mikael L.. / RibDif: can individual species be differentiated by 16S sequencing?. In: Bioinformatics Advances. 2021 ; Vol. 1 ; Issue 1. https://doi.org/10.1093/bioadv/vbab020

Visagie, C.M. ; Frisvad, J.C. ; Visagie, A ; Houbraken, J ; Seifert, KA ; Samson, RA ; Jacobs K. / A re-evaluation of Penicillium section Canescentia, including the description of five new species. In: Persoonia. 2021 ; Vol. 46. https://doi.org/10.3767/persoonia.2021.46.06

Wang, Xiyan ; Isbrand, Thomas ; Christensen, Emil Ø. ; Melchiorsen, Jette ; Larsen, Thomas O. ; Zhang, Sheng-Da ; Gram, Lone. / Identification and verification of the prodigiosin biosynthetic gene cluster (BGC) in Pseudoalteromonas rubra S4059. In: Microbiology Spectrum. 2021 ; Vol 9, Issue 2. https://doi.org/10.1128/Spectrum.01171-21

Wang, Xiyan ; Isbrandt, Thomas ; Strube, Mikael L. ; Paulsen, Sara S. ; Nielsen, Maike W. ; Buijs, Yannick ; Schoof, Erwin M. ; Larsen, Thomas O. ; Gram, Lone ; Zhang, Sheng-Da. / Chitin degradation machinery and secondary metabolite profiles in the marine bacterium Pseudoalteromonas rubra S4059. In: Marine Drugs (MDPI).2021 ; Vol. 19. https://doi.org/10.3390/md19020108

Wang, Xinhui ; Subko, Karolina ; Kildgaard, Sara ; Frisvad, Jens C and Larsen, Thomas O. / Mass Spectrometry-Based Network Analysis Reveals New Insights Into the Chemodiversity of 28 Species in Aspergillus section Flavi. In: frontiers in Fungal Biology. 2021 ; Vol. 2: 719420 (1-13). https://doi.org/10.3389/ffunb.2021.719420

Wang, Yayu ; Shuilin, Liao ; Gai, Yingbao ; Liu, Guilin ; Jin, Tao ; Liu, Huan ; Gram, Lone ; Strube, Mikael L. ; Fan, Guangyi ; Sahu, Sunil K. ; Liu, Shanshan; Gan, Shuheng ; Xie, Zhangxian ; Kong, Lingfen ; Zhang, Pengfan ; Liu, Xin ; Wang, Da-Zhi. / Metagenomic analysis reveals community structure and their metabolic potential for nitrogen acquisition in the oligotrophic surface waters of the Indian Ocean. In: Frontiers Microbiology. 2021 ; Vol. 12. https://doi.org/10.3389/fmicb.2021.518865

Zhang, Sheng-Da ; Isbrandt, Thomas ; Lindqvist, Laura L. ; Larsen, Thomas O. ; Gram, Lone. / Holomycin, an Antibiotic Secondary Metabolite, Is Required for Biofilm Formation by the Native Producer Photobacterium galatheae S2753. In: Applied Environmental Microbiology. 2021 ; Vol. 87. https://doi.org/10.1128/AEM.00169-21

2020 Publications

Barret, Kristian ; Jensen Kristian ; Meyer, Anne S. ; Frisvad, Jens C. ; Lange, Lene. / Fungal secretome profle categorization of CAZymes by function and family corresponds to fungal phylogeny and taxonomy: Example Aspergillus and Penicillium. In: Scientific Reports. Nature Research. 2021 ; Vol.10. https://doi.org/10.1038/s41598-020-61907-1

Bech, Pernille K. ; Lysdal, Klaus L. ; Gram, Lone ; Bentzon-Tilia, Mikkel ; Strube, Mikael L.. / Marine Sediments Hold an Untapped Potential for Novel Taxonomic and Bioactive Bacterial Diversity. In: mSystems. 2020 ; Vol. 5, No. 5. https://doi.org/10.1128/mSystems.00782-20

Buijs, Yannick ; Isbrandt, Thomas ; Zhang, Sheng-Da ; Ostenfeld, Thomas L. ; Gram, Lone. / The Antibiotic Andrimid Produced by Vibrio coralliilyticus Increases Expression of Biosynthetic Gene Clusters and Antibiotic Production in Photobacterium galatheae. In: Frontiers in Microbiology. 2020 ; Vol. 11. https://doi.org/10.3389/fmicb.2020.622055

Contesini, Fabiano Jares ; Normand Frandsen, Rasmus John ; Damasio, André. / Editorial: CAZymes in Biorefinery: From Genes to Application. In: Frontiers in Bioengineering and Biotechnology. 2020 ; Vol.9. https://doi.org/10.3389/fbioe.2021.622817

Dittmann, Karen K. ; Rasmussen, Bastian B. ; Melchiorsen, Jette ; Sonnenschein, Eva C. ; Gram, Lone ; Bentzon-Tilia, Mikkel. / Changes in the microbiome of mariculture feed organisms after treatment with a potentially probiotic strain of Phaeobacter inhibens. In: Applied and Environmental Microbiology. 2020. https://doi.org/10.1128/aem.00499-20

Frisvad, Jens C. ; Isbrandt, T. ; Larsen, Thomas O.. / Fungal Partially Reducing Polyketides and Related Natural Products From AspergillusPenicillium, and Talaromyces. In: Comprehensive Natural Products III: Chemistry and Biology. 2020 ; Vol 1: 313-332. https://doi.org/10.1016/B978-0-12-409547-2.14731-6

García, Carolina F. ; Kretschmer, Martin ; Lozano-Andrade, Carlos N. ; Schönleitner, Markus ; Dragoŝ, Anna ; Kovács, Ákos T. ; Lieleg, Oliver. / Metal ions weaken the hydrophobicity and antibiotic resistance of Bacillus subtilis NCIB 3610 biofilms. In: NPJ biofilms and microbiomes. 2020 ; Vol. 6. https://doi.org/10.1038/s41522-019-0111-8

Houbraken, J. ; Kocsubé, S. ; Visagie, C.M. ; Yilmaz, N. ; Wang, X.-C. ; Meijer, M. ; Kraak, B. ; Hubka, V. ; Bensch, K. ; Samson, R.A. ; Frisvad, J.C.. / Classification of AspergillusPenicilliumTalaromyces and related genera (Eurotiales): An overview of families, genera, subgenera, sections, series and species. In: Studies in Mycology. 2020 ; Vol. 95. https://doi.org/10.1016/j.simyco.2020.05.002

Khatri, Shivani ; Sazinas, Pavelas ; Shivay, Yashbir S. ; Sharma, Shilpi ; Jelsbak, Lars. / Complete Genome Sequence of Pseudomonas sp. Strain SK, Isolated from Organic Wheat Rhizosphere. In: Microbiology Resource Announcements. 2020 ; Vol. 9, No. 26. https://doi.org/10.1128/MRA.00510-20

Kiesewalter, Heiko T. ; Lozano-Andrade, Carlos N. ; Maróti, Gergely ; Snyder, Dan ; Snyder, Dan ; Jørgensen, Tue S. ; Weber, Tilmann ; Kovács, Ákos T. . / Complete Genome Sequences of 13 Bacillus subtilis Soil Isolates for Studying Secondary Metabolite Diversity. In: Microbiology Resource Announcements. 2020 ; Vol. 9, No. 2. (OA) https://doi.org/10.1128/mra.01406-19

Kiesewalter, Heiko T. ; Lozano-Andrade, Carlos N. ; Strube, Mikael L. ; Kovács, Ákos T. . / Secondary metabolites of Bacillus subtilis impact the assembly of soil-derived semisynthetic bacterial communities. In: Beilstein Journal of Organic Chemistry. 2020 ; Vol. 16. pp. 2983-2998. https://doi.org/10.3762/bjoc.16.248

Kjærbølling, Inge ; Vesth, Tammi C. ; Frisvad, Jens C. ; Nybo, Jane L. ; Theobald, Sebastian ; Kildgaard, Sara ; Petersen, Thomas I. ; Kuo, Alan ; Sato, Atsushi ; Lyhne, Ellen K. ; Kogle, Martin E. ; Wiebenga, Ad ; Kun, Roland S. ; Lubbers, Ronnie J.M. ; Mäkelä, Miia R. ; Barry, Kerrie ; Chovatia, Mansi ; Clum, Alicia ; Daum, Chris ; Haridas, Sajeet ; He, Guifen ; LaButti, Kurt ; Lipzen, Anna ; Mondo, Stephen ; Pangilinan, Jasmyn ; Riley, Robert ; Salamov, Asaf ; Simmons, Blake A. ; Magnuson, Jon K. ; Henrissat, Bernard ; Mortensen, Uffe H. ; Larsen, Thomas O. ; de Vries, Ronald P. ; Grigoriev, Igor V. ; Machida, Masayuki ; Baker, Scott E. ; Andersen, Mikael R. . / A comparative genomics study of 23 Aspergillus species from section Flavi. In: Nature Communications. 2020 ; Vol. 11, No. 1. https://doi.org/10.1038/s41467-019-14051-y

Kovács, Ákos T.. / A fungal scent from the cheese. In: Environmental Microbiology. 2020 ; Vol. 22, No. 11. pp. 4524-4526. https://doi.org/10.1111/1462-2920.15267

Liao, Shuilin ; Wang, Yayu ; Liu, Huan ; Fan, Guangyi ; Sahu, Sunil K. ; Jin, Tao ; Chen, Jianwei ; Zhang, Pengfan ; Gram, Lone ; Strube, Mikael L. ; Shi, Qiong ; Lee, Simon M.Y. ; Liu, Xin. / Deciphering the Microbial Taxonomy and Functionality of Two Diverse Mangrove Ecosystems and Their Potential Abilities To Produce Bioactive Compounds. In: mSystems. 2020 ; Vol. 5, No. 5. https://doi.org/10.1128/mSystems.00851-19

Malik, Abd. ; Ardalani, Hamidreza ; Anam, Syariful ; McNair , Laura Mikél ; Kromphardt, Kresten J.K. ; Normand Frandsen, Rasmus John ; Franzyk, Henrik ; Staerk, Dan ; Kongstad, Kenneth T.. / Antidiabetic xanthones with α-glucosidase inhibitory activities from an
endophytic Penicillium canescens
. In: Fitoterapia. 2020 ; Vol. 142. https://doi.org/10.1016/j.fitote.2020.104522

Martin, Marivic ; Dragoš, Anna ; Otto, Simon B. ; Schäfer, Daniel ; Brix, Susanne ; Maróti, Gergely ; Kovács, Ákos T.. / Cheaters shape the evolution of phenotypic heterogeneity in Bacillus subtilis biofilms. In: ISME Journal. 2020 ; Vol. 14. https://doi.org/10.1038/s41396-020-0685-4

Otto, Simon B. ; Martin, Marivic ; Schäfer, Daniel ; Hartmann, Raimo ; Drescher, Knut ; Brix, Susanne ; Dragoš, Anna ; Kovács, Ákos T.. / Privatization of Biofilm Matrix in Structurally Heterogeneous Biofilms. In: mSystems. 2020 ; Vol. 5, No. 4. https://doi.org/10.1128/mSystems.00425-20

Paulsen, Sara S. ; Petersen, Thomas I. ; Kirkegaard, Markus ; Buijs, Yannick ; Strube, Mikael L. ; Sonnenschein, Eva ; Larsen, Thomas O. ; Gram, Lone. / Production of the antimicrobial compound tetrabromopyrrole and the Pseudomonas quinolone system precursor, 2-heptyl-4-quinolone, by a novel marine species Pseudoalteromonas galatheae sp. nov.. In: Scientific Reports. 2020 ; Vol. 10. https://doi.org/10.1038/s41598-020-78439-3

Thérien, Maude ; Kiesewalter, Heiko T. ; Auria, Emile ; Charron-Lamoreux, Vincent ; Wibowo, Mario ; Maróti, Gergely ; Kovács, Ákos T. ; Beuregard, Pascale B. / Surfactin production is not essential for pellicle and root-associated biofilmdevelopment of Bacillus subtilis. In: Biofilm. 2020 ; Vol. 2. https://doi.org/10.1016/j.bioflm.2020.100021

Wibowo, Mario ; Ding, Ling. / Chemistry and Biology of Natural Azoxy Compounds. In: Journal of Natural Products. 2020 ; Vol. 83, No. 11. https://doi.org/10.1021/acs.jnatprod.0c00725

Wibowo, Mario ; Gotfredsen, Charlotte H. ; Sassetti, Elisa ; Melchiorsen, Jette ; Clausen, Mads H. ; Gram, Lone ; Ding, Ling. / Azodyrecins A-C: Azoxides from a Soil-Derived Streptomyces Species. In: Journal of Natural Products. 2020. https://doi.org/10.1021/acs.jnatprod.0c00339

2019 Publications

Blin, Kai ; Shaw, Simon ; Steinke, Katharina ; Villebro, Rasmus ; Ziemert, Nadine ; Lee, Sang Y. ; Medema, Marnix H. ; Weber, Tilmann. / antiSMASH 5.0: updates to the secondary metabolite genome mining pipelineIn: Nucleic acids research. 2019 ; Vol. 87. https://doi.org/10.1093/nar/gkz310

Buijs, Yannick ; Bech, Pernille K. ; Vazquez Albacete, Dario ; Bentzon-Tilia, Mikkel ; Sonnenschein, Eva C. ; Gram, Lone ; Zhang, Sheng-Da. / Marine Proteobacteria as a source of natural products: advances in molecular tools and strategies. In: Natural Product Reports. 2019 ; Vol. 36. https://doi.org/10.1039/c9np00020h

de Reus, Elise ; Nielsen, Mikkel R. ; Frandsen, Rasmus J.N. / Metabolic and regulatory insights from the experimental Horizontal Gene Transfer of the aurofusarin and bikaverin gene clusters to Aspergillus nidulans. In: Molecular Microbiology. 2019 ; Vol. 112, No. 6. https://doi.org/10.1111/mmi.14376

Devi, Sagarika ; Kiesewalter, Heiko T. ; Kovács, Renátó ; Frisvad, Jens C. ; Weber, Tilmann ; Larsen, Thomas O. ; Kovács, Ákos T. ; Ding, Ling. / Depiction of secondary metabolites and antifungal activity of Bacillus velezensis DTU001. In: Synthetic and Systems Biotechnology. 2019 ; Vol. 4, No. 3. https://doi.org/10.1016/j.synbio.2019.08.002

Dittmann, Karen K. ; Sonnenschein, Eva C. ; Egan, Suhelen ; Gram, Lone ; Bentzon-Tilia, Mikkel. / Impact of Phaeobacter inhibens on marine eukaryote-associated microbial communities. In: environmental microbiology reports. 2019 ; Vol. 11, No. 3. https://doi.org/10.1111/1758-2229.12698

Frisvad, J.C. ; Hubka, V. ; Ezekiel, C.N. ; Hong, S.-B. ; Nováková, A. ; Chen, A.J. ; Arzanlou, M. ; Larsen, T.O. ; Sklenár, F. ; Mahakarnchanakul, W. ; Samson, R.A. ; Houbraken, J. / Taxonomy of Aspergillus section Flavi and their production of aflatoxins, ochratoxins and other mycotoxins. In: Studies in Mycology. 2019 ; Vol 1-63. https://doi.org/10.1016/j.simyco.2018.06.001

Kjeldgaard, Bodil ; Listian, Stevanus A. ; Ramaswamhi, Valliyammai ; Richter, Anne ; Kiesewalter, Heiko T. ; Kovács, Ákos T.. / Fungal hyphae colonization by Bacillus subtilis relies on biofilm matrix components. In: Biofilm. 2019 ; Vol.1. https://doi.org/10.1016/j.bioflm.2019.100007

Kovács, Ákos T. / Bacillus subtilis. In: Trends in Microbiology. 2019 ; Vol. 27, No. 8. https://doi.org/10.1016/j.tim.2019.03.008

Kovács, Ákos T. ; Dragoš, Anna. / Evolved Biofilm: Review on the Experimental Evolution Studies of Bacillus subtilis Pellicles. In: Journal of molecular biology. 2019 ; Vol. 431, No. 23. https://doi.org/10.1016/j.jmb.2019.02.005

Palazzotto, Emilia ; Tong, Yaojun ; Lee, Sang Y. ; Weber, Tilmann. / Synthetic biology and metabolic engineering of actinomycetes for natural product discovery. In: Biotechnology Advances. 2019 ; Vol. 37, No. 6. https://doi.org/10.1016/j.biotechadv.2019.03.005

Phippen, Christopher B.W. ; Jørgensen, Cecilie M. ; Bentzon-Tilia, Mikkel ; Gotfredsen, Charlotte H. ; Larsen, Thomas O. ; Gram, Lone ; Sonnenschein, Eva C.. / Isolation of Methyl Troposulfenin from Phaeobacter inhibens. In: Journal of Natural Products. 2019 ; Vol. 82, 1387-1390. https://doi.org/10.1021/acs.jnatprod.8b01097

Sartor, Francesca ; Eelderink-Chen, Zheng ; Aronson, Ben ; Bosman, Jasper ; Hibbert, Lauren E. ; Dodd, Antony N. ; Kovács, Ákos T. ; Merrow, Martha. / Are There Circadian Clocks in Non-Photosynthetic Bacteria?. In: MDPI Biology. 2019 ; Vol 8, Issue 8. http://dx.doi.org/10.3390/biology8020041

Sazinas, Pavelas ; Hansen, Morten L. ; Aune, May I. ; Fischer, Marie H. ; Jelsbak, Lars. / A Rare Thioquinolobactin Siderophore Present in a Bioactive Pseudomonas sp. DTU12.1. In: Genome Biol. Evol. . 2019 ; Vol.11.  https://doi.org/10.1093/gbe/evz267

Sazinas, Pavelas ; Aune, May I. ; Fischer, Marie H. ; Lauritsen, Jonas G. ; Gram, Lone ; Jelsbak, Lars. / Complete Genome Sequence of a Bioactive Pseudomonas sp. Strain, DTU12.3, Isolated from Soil in Denmark. In: Microbiology Resource Announcements. 2019 ; Vol. 8, No. 16. https://doi.org/10.1128/mra.00121-19

2018 Publications

Dragos, Anna ; Kiesewalter, Heiko T. ; Martin, Marivic ; Hsu, Chih Y. ; Hartmann, Raimo ; Wechsler, Tobias ; Eriksen, Carsten ; Brix, Susanne ; Drescher, Knut ; Stanley-Wall, Nicola ; Kümmerli, Rolf ; Kovács, Ákos T.. / Division of Labor during Biofilm Matrix Production. In: Current Biology. 2018 ; Vol. 28, No. 12. https://doi.org/10.1016/j.cub.2018.04.046

Frisvad, J.C. / A critical review of producers of small lactone mycotoxins: patulin, penicillic acid and moniliformin. In: World Mycotoxin Journal. 2018 ; Vol. 11, No. 1. https://doi.org/10.3920/WMJ2017.2294

Inge Kjærbølling, Tammi C. Vesth, Jens C. Frisvad, Jane L. Nybo, Sebastian Theobald,  Alan Kuo, Paul Bowyer, Yudai Matsuda, Stephen Mondo, Ellen K. Lyhne, Martin E. Kogle, Alicia Clum, Anna Lipzen, Asaf Salamov,  Chew Yee Ngan, Chris Daum, Jennifer Chiniquy, Kerrie Barry, Kurt LaButti, Sajeet Haridas,  Blake A. Simmons,  Jon K. Magnuson, Uffe H. Mortensen, Thomas O. Larsen, Igor V. Grigoriev, Scott E. Bake, Mikael R. Andersen. /Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species. In: Proceedings of the National Academy of Sciences of the United States of America. 2018 ; Vol 115, Issue 4. https://doi.org/10.1073/pnas.1715954115

Palazzotto, Emilia ; Weber, Tilmann. / Omics and multi-omics approaches to study the biosynthesis of secondary metabolites in microorganisms. In: Current Opinion in Microbiology. 2018 ; Vol. 45. https://doi.org/10.1016/j.mib.2018.03.004

Richter, Anne ; Hoelscher, Theresa ; Pausch, Patrick ; Sehrt, Tim ; Brockhaus, Franziska ; Bange, Gert ; Kovács, Ákos T.. / Hampered motility promotes the evolution of wrinkly phenotype in Bacillus subtilis. In: BMC Evolutionary Biology. 2018 ; Vol. 18, No. 1. https://doi.org/10.1186/s12862-018-1266-2

Vesth, Tammi C. ; Nybo, Jane L ; Theobald, Sebastian ; Frisvad, Jens C. ; Larsen, Thomas O. ; Nielsen, Kristian F. ; Hoof, Jakob B. ; Brandl, Julian ; Salamov, Asaf ; Riley, Robert ; Gladden, John M. ; Phatale, Pallavi ; Nielsen, Morten T. ; Lyhne, Ellen K. ; Kogle, Martin E. ; Strasser, Kimchi ; McDonnell, Erin ; Barry, Kerrie ; Clum, Alicia ; Chen, Cindy ; LaButti, Kurt ; Haridas, Sajeet ; Nolan, Matt ; Sandor, Laura ; Kuo, Alan ; Lipzen, Anna ; Hainaut, Matthieu ; Drula, Elodie ; Tsang, Adrian ; Magnuson, Jon K. ; Henrissat, Bernard ; Wiebenga, Ad ; Simmons, Blake A. ; Mäkelä, Miia R. ; de Vries, Ronald P. ; Grigoriev, Igor V. ; Mortensen, Uffe H. ; Baker, Scott E. ; Andersen, Mikael R.. / Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri. In: Nature Genetics. 2018 ; Vol. 50. https://doi.org/10.1038/s41588-018-0246-1