Publications

Selected authored publications by CeMiSt members

2020

Kautsar, Satria A ; Blin, Kai ; Shaw, Simon ; Weber, Tilmann ; Medema, Marnix H. / BiG-FAM: the biosynthetic gene cluster families database. In: Nucleic acids research. 2020. https://doi.org/10.1093/nar/gkaa812

Blin, Kai ; Shaw, Simon ; Kautsar, Satria A. ; Medema, Marnix H ; Weber, Tilmann. / The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes. In: Nucleic acids research. 2020. https://doi.org/10.1093/nar/gkaa978

Hansen, Morten Lindqvist ; He, Zhiming ; Wibowo, Mario ; Jelsbak, Lars. / Development of a whole cell biosensor for detection of 2, 4-diacetylphloroglucinol (DAPG) producing bacteria from grassland soil. In: Applied and Environmental Microbiology. 2020. https://doi.org/10.1128/AEM.01400-20

Khatri, Shivani ; Sazinas, Pavelas ; Shivay, Yashbir S. ; Sharma, Shilpi ; Jelsbak, Lars. / Complete Genome Sequence of Pseudomonas sp. Strain SK, Isolated from Organic Wheat Rhizosphere. In: Microbiology Resource Announcements. 2020 ; Vol. 9, No. 26. https://doi.org/10.1128/MRA.00510-20

Wibowo, Mario ; Ding, Ling. / Chemistry and Biology of Natural Azoxy Compounds. In: Journal of Natural Products. 2020 ; Vol. 83, No. 11. pp. 3482-3491. https://doi.org/10.1021/acs.jnatprod.0c00725

Wibowo, Mario ; Gotfredsen, Charlotte H. ; Sassetti, Elisa ; Melchiorsen, Jette ; Clausen, Mads Hartvig ; Gram, Lone ; Ding, Ling. / Azodyrecins A-C: Azoxides from a Soil-Derived Streptomyces Species. In: Journal of Natural Products. 2020. https://doi.org/10.1021/acs.jnatprod.0c00339

Liao, Shuilin ; Wang, Yayu ; Liu, Huan ; Fan, Guangyi ; Sahu, Sunil Kumar ; Jin, Tao ; Chen, Jianwei ; Zhang, Pengfan ; Gram, Lone ; Strube, Mikael Lenz ; Shi, Qiong ; Lee, Simon Ming Yuen ; Liu, Xin. / Deciphering the Microbial Taxonomy and Functionality of Two Diverse Mangrove Ecosystems and Their Potential Abilities To Produce Bioactive Compounds. In: mSystems. 2020 ; Vol. 5, No. 5.https://doi.org/10.1128/mSystems.00851-19

Paulsen, Sara Skøtt ; Petersen, Thomas Isbrandt ; Kirkegaard, Markus ; Buijs, Yannick ; Strube, Mikael Lenz ; Sonnenschein, Eva ; Larsen, Thomas Ostenfeld ; Gram, Lone. / Production of the antimicrobial compound tetrabromopyrrole and the Pseudomonas quinolone system precursor, 2‑heptyl‑4‑quinolone, by a novel marine species Pseudoalteromonas galatheae sp. nov. In: Scientific Reports. 2020 ; Vol. 10.https://doi.org/10.1038/s41598-020-78439-3

Bech, Pernille Kjersgaard ; Lysdal, Klaus Lars ; Gram, Lone ; Bentzon-Tilia, Mikkel ; Strube, Mikael Lenz. / Marine Sediments Hold an Untapped Potential for Novel Taxonomic and Bioactive Bacterial Diversity. In: mSystems. 2020 ; Vol. 5, No. 5.https://doi.org/10.1128/mSystems.00782-20

Dittmann, Karen K. ; Rasmussen, Bastian Barker ; Melchiorsen, Jette ; Sonnenschein, Eva C. ; Gram, Lone ; Bentzon-Tilia, Mikkel. / Changes in the microbiome of mariculture feed organisms after treatment with a potentially probiotic strain of Phaeobacter inhibens. In: Applied and Environmental Microbiology. 2020. https://doi.org/10.1128/aem.00499-20

Kiesewalter, Heiko T. ; Lozano-Andrade, Carlos N. ; Strube, Mikael L. ; Kovács, Ákos T. / Secondary metabolites of Bacillus subtilis impact the assembly of soil-derived semisynthetic bacterial communities. In: Beilstein Journal of Organic Chemistry. 2020 ; Vol. 16. pp. 2983-2998. https://doi.org/10.3762/bjoc.16.248

Otto, Simon B. ; Martin, Marivic ; Schäfer, Daniel ; Hartmann, Raimo ; Drescher, Knut ; Brix, Susanne ; Dragoš, Anna ; Kovács, Ákos T. / Privatization of Biofilm Matrix in Structurally Heterogeneous Biofilms. In: mSystems. 2020 ; Vol. 5, No. 4. https://doi.org/10.1128/mSystems.00425-20

Falcón García, Carolina ; Kretschmer, Martin ; Lozano-Andrade, Carlos N ; Schönleitner, Markus ; Dragoŝ, Anna ; Kovács, Ákos T ; Lieleg, Oliver. / Metal ions weaken the hydrophobicity and antibiotic resistance of Bacillus subtilis NCIB 3610 biofilms. In: NPJ biofilms and microbiomes. 2020 ; Vol. 6. https://doi.org/10.1038/s41522-019-0111-8

Martin, Marivic ; Dragoš, Anna ; Otto, Simon B. ; Schäfer, Daniel ; Brix, Susanne ; Maróti, Gergely ; Kovács, Ákos T. / Cheaters shape the evolution of phenotypic heterogeneity in Bacillus subtilis biofilms. In: ISME Journal. 2020 ; Vol. 14. pp. 2302-2312.

Kovács, Ákos T. / A fungal scent from the cheese. In: Environmental Microbiology. 2020 ; Vol. 22, No. 11. pp. 4524-4526.https://doi.org/10.1111/1462-2920.15267

Thérien, Maude ; Kiesewalter, Heiko T. ; Auria, Emile ; Charron-Lamoreux, Vincent ; Wibowo, Mario ; Maróti, Gergely ; Kovács, Ákos T. ; Beuregard, Pascale B. / Surfactin production is not essential for pellicle and root-associated biofilmdevelopment of Bacillus subtilis. In: Biofilm. 2020 ; Vol. 2. https://doi.org/10.1016/j.bioflm.2020.100021

Kiesewalter, Heiko T.;Lozano-Andrade, Carlos N. ; Maróti, Gergely ; Snyder, Dan ; Snyder, Dan ; Jørgensen, Tue Sparholt;Weber, Tilmann;Kovács, Ákos T.Complete Genome Sequences of 13 Bacillus subtilis Soil Isolates for Studying Secondary Metabolite Diversity. In: Microbiology Resource Announcements. 2020 ; Vol. 9, No. 2. (OA) https://doi.org/10.1128/mra.01406-19

Kjærbølling, Inge ; Vesth, Tammi Camilla ; Frisvad, Jens Christian ; Nybo, Jane L. ; Theobald, Sebastian ; Kildgaard, Sara ; Petersen, Thomas Isbrandt ; Kuo, Alan ; Sato, Atsushi ; Lyhne, Ellen Kirstine ; Kogle, Martin Engelhard ; Wiebenga, Ad ; Kun, Roland S. ; Lubbers, Ronnie J.M. ; Mäkelä, Miia R. ; Barry, Kerrie ; Chovatia, Mansi ; Clum, Alicia ; Daum, Chris ; Haridas, Sajeet ; He, Guifen ; LaButti, Kurt ; Lipzen, Anna ; Mondo, Stephen ; Pangilinan, Jasmyn ; Riley, Robert ; Salamov, Asaf ; Simmons, Blake A. ; Magnuson, Jon K. ; Henrissat, Bernard ; Mortensen, Uffe Hasbro ; Larsen, Thomas Ostenfeld ; de Vries, Ronald P. ; Grigoriev, Igor V. ; Machida, Masayuki ; Baker, Scott E. ; Andersen, Mikael R. / A comparative genomics study of 23 Aspergillus species from section Flavi. In: Nature Communications. 2020 ; Vol. 11, No. 1. https://doi.org/10.1038/s41467-019-14051-y

2019

Sazinas, Pavelas ; Aune, May Iren ; Fischer, Marie Højmark ; Lauritsen,Jonas Greve;Gram, Lone;Jelsbak, Lars. / Complete Genome Sequence of a Bioactive Pseudomonas sp. Strain, DTU12.3, Isolated from Soil in Denmark. In: Microbiology Resource Announcements. 2019 ; Vol. 8, No. 16.https://doi.org/10.1128/MRA.00121-19

de Reus, Elise ; Nielsen, Mikkel Rank ;Frandsen, Rasmus John Normand. / Metabolic and regulatory insights from the experimental Horizontal Gene Transfer of the aurofusarin and bikaverin gene clusters to Aspergillus nidulans. In: Molecular Microbiology. 2019 ; Vol. 112, No. 6. pp. 1684-1700.https://doi.org/10.1111/mmi.14376

 
Buijs, Yannick;Bech, Pernille Kjersgaard;Vazquez Albacete, Dario;Bentzon-Tilia, Mikkel;Sonnenschein, Eva C.;Gram, Lone; Zhang, Sheng-Da. / Marine Proteobacteria as a source of natural products: advances in molecular tools and strategies.In: Natural Product Reports. 2019 ; Vol. 36. pp. 1333–1350.https://doi.org/10.1039/c9np00020h
Devi, Sagarika;Kiesewalter, Heiko T.; Kovács, Renátó;Frisvad, Jens Christian;Weber, Tilmann;Larsen, Thomas Ostenfeld;Kovács, Ákos T.;Ding, Ling.Depiction of secondary metabolites and antifungal activity of Bacillus velezensis DTU001.In:Synthetic and Systems Biotechnology. 2019 ; Vol. 4, No. 3. pp. 142-149. (OA)https://doi.org/10.1016/j.synbio.2019.08.002
Kovács, Ákos T. / Bacillus subtilis. In: Trends in Microbiology. 2019 ; Vol. 27, No. 8. pp. 724-725.https://doi.org/10.1016/j.tim.2019.03.008
Blin, Kai ; Shaw, Simon ; Steinke, Katharina ; Villebro, Rasmus ; Ziemert, Nadine ; Lee, Sang Yup ; Medema, Marnix H ;Weber, Tilmann.antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline. In: Nucleic acids research. 2019 ; Vol. 87, No. W2. pp. W81-W87. (OA) https://doi.org/10.1093/nar/gkz310
Palazzotto, Emilia ; Tong, Yaojun ; Lee, Sang Yup ;Weber, Tilmann.Synthetic biology and metabolic engineering of actinomycetes for natural product discovery.In: Biotechnology Advances. 2019 ; Vol. 37, No. 6.https://doi.org/10.1016/j.biotechadv.2019.03.005
Kovács, Ákos T. ; Dragoš, Anna./ Evolved Biofilm: Review on the Experimental Evolution Studies of Bacillus subtilis Pellicles. In: Journal of molecular biology. 2019 ; Vol. 431, No. 23. pp. 4749-4759.https://doi.org/10.1016/j.jmb.2019.02.005
2018
Dittmann, Karen K. ; Sonnenschein, Eva C. ; Egan, Suhelen ;Gram, LoneBentzon-Tilia, Mikkel. / Impact of Phaeobacter inhibens on marine eukaryote-associated microbial communities. In: Environmental Microbiology Reports. 2019 ; Vol. 11, No. 3. pp. 401-413.https://doi.org/10.1111/1758-2229.12698

Vesth, Tammi Camilla; Nybo, Jane L ; Theobald, Sebastian ; Frisvad, Jens Christian ; Larsen, Thomas Ostenfeld ; Nielsen, Kristian Fog ; Hoof, Jakob Blæsbjerg ; Brandl, Julian ; Salamov, Asaf ; Riley, Robert ; Gladden, John M ; Phatale, Pallavi ; Nielsen, Morten T. ; Lyhne, Ellen K. ; Kogle, Martin Engelhard ; Strasser, Kimchi ; McDonnell, Erin ; Barry, Kerrie ; Clum, Alicia ; Chen, Cindy ; LaButti, Kurt ; Haridas, Sajeet ; Nolan, Matt ; Sandor, Laura ; Kuo, Alan ; Lipzen, Anna ; Hainaut, Matthieu ; Drula, Elodie ; Tsang, Adrian ; Magnuson, Jon K ; Henrissat, Bernard ; Wiebenga, Ad ; Simmons, Blake A ; Mäkelä, Miia R ; de Vries, Ronald P ; Grigoriev, Igor V ; Mortensen, Uffe Hasbro ; Baker, Scott E ;Andersen, Mikael Rørdam. / Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri. In: Nature Genetics. 2018 ; Vol. 50. pp. 1688–1695.https://doi.org/10.1038/s41588-018-0246-1

Kjærbølling, Inge ;Vesth, Tammi C. ; Frisvad, Jens C. ; Nybo, Jane L. ; Theobald, Sebastian ; Kuo, Alan ; Bowyer, Paul ; Matsuda, Yudai ; Mondo, Stephen ; Lyhne, Ellen K. ; Kogle, Martin E. ; Clum, Alicia ; Lipzen, Anna ; Salamov, Asaf ; Ngan, Chew Yee ; Daum, Chris ; Chiniquy, Jennifer ; Barry, Kerrie ; LaButti, Kurt ; Haridas, Sajeet ; Simmons, Blake A. ; Magnuson, Jon K. ; Mortensen, Uffe H. ; Larsen, Thomas O. ; Grigoriev, Igor V. ; Baker, Scott E. ;Andersen, Mikael R. / Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species. In: Proceedings of the National Academy of Sciences of the United States of America. 2018 ; Vol. 115, No. 4. pp. E753-E761.https://doi.org/10.1073/pnas.1715954115

Richter, Anne ; Hoelscher, Theresa ; Pausch, Patrick ; Sehrt, Tim ; Brockhaus, Franziska ; Bange, Gert ;Kovács, Ákos T.Hampered motility promotes the evolution of wrinkly phenotype in Bacillus subtilisIn: BMC Evolutionary Biology. 2018 ; Vol. 18, No. 1.https://doi.org/10.1186/s12862-018-1266-2

Dragos, Anna ;Kiesewalter, Heiko T.; Martin, Marivic ; Hsu, Chih Yu ; Hartmann, Raimo ; Wechsler, Tobias ; Eriksen, Carsten ; Brix, Susanne ; Drescher, Knut ; Stanley-Wall, Nicola ; Kümmerli, Rolf ;Kovács, Ákos T.Division of Labor during Biofilm Matrix Production. In: Current Biology. 2018 ; Vol. 28, No. 12. pp. 1903-1913.https://doi.org/10.1016/j.cub.2018.04.046

Frisvad, J.C.A critical review of producers of small lactone mycotoxins: patulin, penicillic acid and moniliformin. In: World Mycotoxin Journal. 2018 ; Vol. 11, No. 1. pp. 73-100. (OA) https://doi.org/10.3920/WMJ2017.2294

Palazzotto, Emilia ;Weber, Tilmann./ Omics and multi-omics approaches to study the biosynthesis of secondary metabolites in microorganisms. In: Current opinion in Microbiology. 2018 ; Vol. 45. pp. 109-116.https://doi.org/10.1016/j.mib.2018.03.004