Publications Supported by DNRF137

2021 Printed Publications supported by DNRF137

Ardalani, Hamidreza ; Anam, Syariful ; Kromphardt, Kresten J.K. ; Staerk, Dan; Kongstad, Kenneth T. . / Coupling microplate‐based antibacterial assay with liquid chromatography for high‐resolution growth inhibition profiling of crude extracts: validation and proof‐of‐concept study with Staphylococcus aureus. In: Molecules (MDPI). 2021 ; Vol. 26, Issue 6. https://doi.org/10.3390/molecules26061550

Arnaouteli, Sofia ; Bamford, Natalie C. ;  Stanley-Wall, Nicola R. ;  Kovács, Ákos T.. / Bacillus subtilis biofilm formation and social interactions. In: Nature Reviews Microbiology. 2021 ; Vol. 19. https://doi.org/10.1038/s41579-021-00540-9

Blin, Kai ; Shaw, Simon ; Kautsar, Satria A. ; Medema, Marnix H. ; Weber, Tilmann. / The antiSMASH database version 3: increased taxonomic coverage and new query features for modular enzymes. In: Nucleic Acids Research. 2021 ; Vol. 49. https://doi.org/10.1093/nar/gkaa978

Blin, Kai ; Shaw, Simon ; Kloosterman, Alexander M. ; Charlop-Powers, Zach ; van Wezel, Gilles P. ; Medema, Marnix H. ; Weber, Tilmann. / antiSMASH 6.0: improving cluster detection and comparison capabilities. In: Nucleic Acids Research. 2021. https://doi.org/10.1093/nar/gkab335

Borre, Ingrid ;  Sonnenschein, Eva C.. / Draft genome sequences of nine environmental bacterial isolates colonizing plastic. In: Microbiology Resource Announcements. 2021 ; Vol. 10, Issue 11. https://doi.org/10.1128/MRA.01485-20

Buijs, Yannick ; Zhang, Sheng-Da ; Jørgensen, Karen M. ; Isbrandt, Thomas ; Larsen, Thomas O. Gram, Lone. / Enhancement of antibiotic production by co-cultivation of two antibiotic producing marine Vibrionaceae strains. In: FEMS Microbiology Ecology. 2021 ; Vol. 97. https://doi.org/10.1093/femsec/fiab041

Ding, Ling ; Zhang, Sheng-Da. ; Haidar, A.K. ; Bajimaya, M. ; Guo, Y. ; Larsen, Thomas O. and Gram, Lone. / Polycyclic tetramate macrolactams–a group of natural bioactive metallophores. In: frontiers in Chemistry. 2021 ; Vol 9: 772858. https://doi.org/10.3389/fchem.2021.772858

Dragoš, Anna ; Andersen,  Aaron J.C. ; Lozano-Andrade, Carlos N. ; Kempen, Paul J. ; Kovács, Ákos T. ; Strube, Mikael L.. / Phages carry interbacterial weapons encoded by biosynthetic gene clusters. In: Current Biology. 2021 ; Vol. 31, 1-11. https://doi.org/10.1016/j.cub.2021.05.046

Dragoš, Anna ; Priyadarshini, B ; Hasan, Zahraa ; Strube, Mikael L. ; Kempen, Paul J. ; Maróti, Gergely ; Kaspar, Charlotte ; Bose, Baundauna ; Burton, Briana M. ; Bischofs, Ilka B. ; Kovács, Ákos T.. / Pervasive prophage recombination occurs during evolution of spore-forming Bacilli. In: ISME Journal. 2021 ; Vol. 15. https://doi.org/10.1038/s41396-020-00854-1

Eelderink-Chen, Zheng ; Bosman, Jasper ; Sartor,  Francesca ; Dodd, Antony N. ; Kovács, Ákos T., Merrow, Martha. / A circadian clock in a nonphotosynthetic prokaryote. In: Science Advances. 2021 ; Vol. 7. https://doi.org/10.1126/sciadv.abe2086

Hansen, Josefine ; Melchiorsen, Jette ; Mateiu, Ramona V. ; Ciacotich, Nicole ; Gram, Lone ; Sonnenschein, Eva C.. / Effect of polymer type on the colonization of plastic pellets by marine bacteria. In: FEMS Microbiology Letters. 2021 ; Vol. 368. https://doi.org/10.1093/femsle/fnab026

Hansen, Morten L. ;  He, Zhiming ; Wibowo, Mario ; Jelsbak, Lars. / A whole-cell biosensor for detection of 2,4-diacetylphloroglucinol (DAPG)-producing bacteria from grassland soil. In: Applied and Environmental Microbiology. 2021 ; Vol. 87, Issue 3. https://doi.org/10.1128/AEM.01400-20

Jarmusch, Scott A. ; van der Hooft, Justin J.J. ; Dorrestein, Pieter ; Jarmusch, Alan K.. / Advancements in Capturing and Mining Mass Spectrometry Data Are Transforming Natural Products Research. In: Natural Product Reports. 2021 ; Vol.38. https://doi.org/10.1039/D1NP00040C

Kautsar, Satria A. ; Blin, Kai ; Shaw, Simon ; Weber, Tilmann ; Medema, Marnix H.. / BiG-FAM: the biosynthetic gene cluster families database. In: Nucleic Acids Research. 2021 ; Vol. 49. https://doi.org/10.1093/nar/gkaa812

Kiesewalter, Heiko T. ; Lozano-Andrade, Carlos N.; Wibowo, Mario ; Strube, Mikael L., Maróti, Gergely ; Snyder, Dan ; Jørgensen, Tue S. ; Larsen, Thomas O., Cooper, Vaughn S., Weber, Tilmann ; Kovács, Ákos T.. / Genomic and chemical diversity of Bacillus subtilis secondary metabolites against plant pathogenic fungi. In: mSystems. 2021 ; Vol. 6, Issue 1. https://doi.org/10.1128/mSystems.00770-20

Lauritsen, Jonas G. ; Hansen, Morten L. ; Bech, Pernille K. ; Jelsbak, Lars ; Gram, Lone ; Strube, Mikael L.. / Identification and differentiation of Pseudomonas species in field samples using an rpoD amplicon sequencing methodology. In: mSystems. 2021 ; Vol. 6, Issue 4. https://doi.org/10.1128/mSystems.00704-21

Lozano-Andrade, Carlos N. ;  Strube, Mikael L. and  Kovács, Ákos T.. / Complete Genome Sequences of Four Soil-Derived Isolates for Studying Synthetic Bacterial Community Assembly. In: Microbiology Resource Announcements. 2021 ; Vol.10, Issue 46. https://doi.org/10.1128/MRA.00848-21

Sonnenschein, Eva C. ; Jiménez, Guillermo ; Castex, Mathieu ; Gram, Lone. / The Roseobacter-group bacterium Phaeobacter as safe probiotic solution for aquaculture. In: Applied Environmental Microbiology. 2021 ; Vol. 87, Issue 5. https://doi.org/10.1128/AEM.02581-20

Steinke, Kat ; Mohite, Omkar S. ; Weber, Tilmann ; Kovács, Ákos T.. / Phylogenetic distribution of secondary metabolites in the Bacillus subtilis species complex. In: mSystems. 2021 ; Vol. 6, Issue 2. https://doi.org/10.1128/mSystems.00057-21

Strube, Mikael L.. / RibDif: can individual species be differentiated by 16S sequencing?. In: Bioinformatics Advances. 2021 ; Vol. 1 ; Issue 1. https://doi.org/10.1093/bioadv/vbab020

Visagie, C.M. ; Frisvad, J.C. ; Visagie, A ; Houbraken, J ; Seifert, KA ; Samson, RA ; Jacobs K. / A re-evaluation of Penicillium section Canescentia, including the description of five new species. In: Persoonia. 2021 ; Vol. 46. https://doi.org/10.3767/persoonia.2021.46.06

Wang, Xiyan ; Isbrand, Thomas ; Christensen, Emil Ø. ; Melchiorsen, Jette ; Larsen, Thomas O. ; Zhang, Sheng-Da ; Gram, Lone. / Identification and verification of the prodigiosin biosynthetic gene cluster (BGC) in Pseudoalteromonas rubra S4059. In: Microbiology Spectrum. 2021 ; Vol 9, Issue 2. https://doi.org/10.1128/Spectrum.01171-21

Wang, Xiyan ; Isbrandt, Thomas ; Strube, Mikael L. ; Paulsen, Sara S. ; Nielsen, Maike W. ; Buijs, Yannick ; Schoof, Erwin M. ; Larsen, Thomas O. ; Gram, Lone ; Zhang, Sheng-Da. / Chitin degradation machinery and secondary metabolite profiles in the marine bacterium Pseudoalteromonas rubra S4059. In: Marine Drugs (MDPI). 2021 ; Vol. 19. https://doi.org/10.3390/md19020108

Wang, Yayu ; Shuilin, Liao ; Gai, Yingbao ; Liu, Guilin ; Jin, Tao ; Liu, Huan ; Gram, Lone ; Strube, Mikael L. ; Fan, Guangyi ; Sahu, Sunil K. ; Liu, Shanshan; Gan, Shuheng ; Xie, Zhangxian ; Kong, Lingfen ; Zhang, Pengfan ; Liu, Xin ; Wang, Da-Zhi. / Metagenomic analysis reveals community structure and their metabolic potential for nitrogen acquisition in the oligotrophic surface waters of the Indian Ocean. In: Frontiers Microbiology. 2021 ; Vol. 12. https://doi.org/10.3389/fmicb.2021.518865

Zhang, Sheng-Da ; Isbrandt, Thomas ; Lindqvist, Laura L. ; Larsen, Thomas O. ; Gram, Lone. / Holomycin, an Antibiotic Secondary Metabolite, Is Required for Biofilm Formation by the Native Producer Photobacterium galatheae S2753. In: Applied Environmental Microbiology. 2021 ; Vol. 87. https://doi.org/10.1128/AEM.00169-21