Clemmensen SE, Kromphardt KJK, Frandsen RJN 2022. Marker-free CRISPR-Cas9 based genetic engineering of the phytopathogenic fungus, Penicillium expansum. Fungal Genetics and Biology. 160, 103689. https://doi.org/10.1016/j.fgb.2022.103689

Geers AU, Buijs Y,  Strube ML, Gram L, Bentzon-Tilia M 2022. The natural product biosynthesis potential of the microbiomes of Earth – bioprospecting for novel anti-microbial agents in the meta-omics era. Computational and Structural Biotechnology Journal. 20, 343-352. https://doi.org/10.1016/j.csbj.2021.12.024

Hansen ML, Wibowo M, Jarmusch SA, Larsen TO, Jelsbak L 2022. Sequential interspecies interactions affect production of antimicrobial secondary metabolites in Pseudomonas protegens DTU9.1. ISME Journal. https://doi.org/10.1038/s41396-022-01322-8

Henriksen NNSE, Schostag MD, Balder SR, Bech PK, Strube ML, Sonnenschein E, Gram L 2022. The ability of Phaeobacter inhibens to produce tropodithietic acid influences the community dynamics of a microalgal microbiome. ISME Communications. https://doi.org/10.1038/s43705-022-00193-6

Henriksen NNSE, Lindqvist LL, Wibowo M, Sonnenschein EC, Bentzon-Tilia M, Gram L 2022. Role is in the eye of the beholder – the multiple functions of the antibacterial compound tropodithietic acid produced by marine Rhodobacteraceae. FEMS Microbiology Review. 46(3) fuac007. https://doi.org/10.1093/femsre/fuac007

Jakab Á, Kovács F, Balla N, Tóth Z, Ragyák Á, Sajtos Z, Csillag K, Nagy-Köteles C, Nemes D,  Pócsi I, Majoros L, Kovács ÁT,  Kovács R 2022 Physiological and transcriptional profiling of surfactin exerted antifungal effect against Candida albicans. Biomedicine & Pharmacotherapy. 152, 113220 https://doi.org/10.1016/j.biopha.2022.113220

Jautzus T, van Gestel J, Kovács ÁT 2022. Complex extracellular biology drives surface competition in Bacillus subtilis. ISME Journal. 16: 2320-2328. https://doi.org/10.1038/s41396-022-01279-8

Khatri S, Dubey S, Shivay YS, Jelsbak L, Sharma S 2022. Organic farming induces changes in bacterial community and disease suppressiveness against fungal phytopathogens. Applied Soil Ecology. 181, 104658. https://doi.org/10.1016/j.apsoil.2022.104658

Kjeldgaard B, Neves AR, Fonseca C,  Kovács ÁT, Domínguez-Cuevas P 2022. Quantitative high-throughput screening methods designed for identification of bacterial biocontrol strains with antifungal properties. Microbiology Spectrum. 10, 2, e01433-21. https://doi.org/10.1128/spectrum.01433-21

Lin Y, Xu X, Maróti G, Strube ML, Kovács ÁT 2022. Adaptation and phenotypic diversification of Bacillus thuringiensis biofilm are accompanied by fuzzy spreader morphotypes. npj Biofilms and Microbiomes. 8, 27. https://doi.org/10.1038/s41522-022-00292-1

Nordgaard M, Blake C, Maróti G, Strube ML, Kovács ÁT 2022. Experimental evolution of Bacillus subtilis on Arabidopsis thaliana roots reveals fast adaptation and improved root colonization. iScience. 25, 6, 104406. https://doi.org/10.1016/j.isci.2022.104406

Peixoto R, Voolstra CR, Sweet M, Duarte C, Carvalho S, Villela H, Lunshof JE, Gram L, Woodhams DC, Walter J, Roik A, Hentschel U, Vega Thurber R, Daisley B, Ushijima B, Daffonchio D,  Costa R, Keller-Costa T, Bowman J, Rosado AS, Reid G, Mason C, Walke JB, Thomas T, Berg G 2022. Harnessing the microbiome to prevent global biodiversity loss. Nature Microbiology. 7, 1726-1735.https://doi.org/10.1038/s41564-022-01173-1

Perini L, Gostincar C, Lilov M, Frisvad JC, Kostansek R, Nicoles M, Williamson C, Anesio, M., Zalar P, Gunde-Cimerman N 2022. Interactions of Fungi and Algae from the Greenland Ice Sheet. Environmental Microbiology. https://link.springer.com/article/10.1007/s00248-022-02033-5

Sanchez-Navarro R, Nuhamunada M, Mohite O, Wasmund K, Albertsen M, Gram L, Nielsen PH, Weber T, Singleton C 2022.  Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem. mSystems. 20, 7, 6. https://doi.org/10.1128/msystems.00632-22

Schostag MD,  Gobbi A,  Fini MN, Ellegaard-Jensen L, Aamand J, Hansen LH, Muff J, Albers CN 2022. Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue. Water Research. 216, 118352. https://doi.org/10.1016/j.watres.2022.118352

Shaaban M, Abdel-Razek AS, Previtali V, Hartvig CM, Gotfredsen CH, Laatsch H, Ding L 2022. Sulochrins and alkaloids from a fennel endophyte Aspergillus sp. FVL2. Natural Product Research. https://doi.org/10.1080/14786419.2021.2005054

Sun X, Xu Z, Xie J, Hesselberg-Thomsen V, Tan T, Zheng D, Strube ML, Dragoš A, Shen Q, Zhang R, Kovács ÁT 2022. Bacillus velezensis stimulates resident rhizosphere Pseudomonas stutzeri for plant health through metabolic interactions. ISME Journal. 16, 3, 774–787. https://doi.org/10.1038/s41396-021-01125-3

Terlouw BR, Blin K, Navarro-Muñoz JC,  Avalon N, Chevrette MG, Egbert S, Lee S, Meijer D, Recchia MJJ, Reitz ZL, van Santen JA, Selem-Mojica N, Tørring T, Zaroubi L, Alanjary M, Aleti G, Aguilar C, Al-Salihi SAA, Augustijn HE, Avelar-Rivas JA, Avitia-Domínguez LA, Barona-Gomez F, Bernaldo-Agüero J, Bielinski VA, Biermann F,  Booth TJ, Carrion Bravo VJ, Castelo-Branco R, Chagas FO, Cruz-Morales P, Du C, Duncan KR, Gavriilidou A, Gayrard D, Gutiérrez-García K, Haslinger K, Helfrich EJN, van der Hooft JJJ, Jati AP, Kalkreuter E, Kalyvas N, Kang KB, Kautsar S, Kim W, Kunjapur A, Li YX, Lin GM, Loureiro C, Louwen JJR, Louwen NL, Lund G, Parra J, Philmus B, Pourmohsenin B, Pronk LJU, Rego A, Rex DAB, Robinson S, Rosas-Becerra LR, Roxborough ET, Schorn MA, Scobie DJ, Singh KS, Sokolova N, Tang X, Udwary D, Vigneshwari A, Vind K, Vromans SPJM, Waschulin V, Williams SE, Winter J, Witte TE, Xie H, Yang D, Yu J, Zdouc M, Zhong Z, Collemare J, Linington RG, Weber T, Medema MH 2022. MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Nucleic Acids Research. https://doi.org/10.1093/nar/gkac1049

Tesdorpf JE, Geers AU,  Strube ML, Gram L, Bentzon-Tilia M 2022. Roseobacter Group Probiotics Exhibit Differential Killing of Fish Pathogenic Tenacibaculum Species. Applied and Environmental Microbiology. 88, 6. https://doi.org/10.1128/aem.02418-21

Wang X, Jarmusch SA, Frisvad JC, Larsen TO 2022. Current status of secondary metabolite pathways linked to their related biosynthetic gene clusters in Aspergillus section Nigri. Natural Product Reviews. https://doi.org/10.1039/D1NP00074H

Wang X, Serrano R, González-Menéndez V, Mackenzie TA, Ramos MC, Frisvad JC, Larsen TO 2022.  A Molecular Networking Based Discovery of Diketopiperazine Heterodimers and Aspergillicins from Aspergillus caelatus. Journal of Natural Products. 85, 1, 25-33. https://doi.org/10.1021/acs.jnatprod.1c00526 

Wang Y, Wang X,  Sun S, Jin C, Su J, Wei J, Luo X, Wen J, Wei T, Sahu SK, Zou H, Chen H, Zhang G, Liu X, Xu X, Gram L, Yang H, Wang E, Liu H 2022.  GWAS, MWAS and mGWAS provide insights into precision agriculture based on genotype-dependent microbial effects in foxtail millet. Nature Communications. 13, 5913. https://doi.org/10.1038/s41467-022-33238-4 

Zhang SD, Lindqvist LL, Isbrandt T, Borre I, Wibowo M, Wennekers Nielsen M, Ding L, Larsen TO, Gram L 2022. Solonamides, a Group of Cyclodepsipeptides, Influence Motility in the Native Producer Photobacterium galatheae S2753. Applied and Environmental Microbiology. 88, 17. https://doi.org/10.1128/aem.01105-22 

Barret, K Jensen K, Meyer AS Frisvad JC, Lange L 2020 Fungal secretome profle categorization of CAZymes by function and family corresponds to fungal phylogeny and taxonomy: Example Aspergillus and Penicillium. Scientific Reports, 10. https://doi.org/10.1038/s41598-020-61907-1

Bech PK, Lysdal KL, Gram L, Bentzon-Tilia M, Strube ML 2020 Marine Sediments Hold an Untapped Potential for Novel Taxonomic and Bioactive Bacterial Diversity. mSystems, 5, 5. https://doi.org/10.1128/mSystems.00782-20

Buijs Y, Isbrandt T, Zhang SD, Larsen TO,  Gram L 2020. The Antibiotic Andrimid Produced by Vibrio coralliilyticus Increases Expression of Biosynthetic Gene Clusters and Antibiotic Production in Photobacterium galatheae. Frontiers in Microbiology, 11. https://doi.org/10.3389/fmicb.2020.622055

Contesini FJ, Frandsen RJN, Damasio A 2020. Editorial: CAZymes in Biorefinery: From Genes to Application. Frontiers in Bioengineering and Biotechnology, .9. https://doi.org/10.3389/fbioe.2021.622817

Dittmann KK, Rasmussen BB, Melchiorsen J, Sonnenschein EC, Gram L, Bentzon-Tilia M 2020. Changes in the microbiome of mariculture feed organisms after treatment with a potentially probiotic strain of Phaeobacter inhibens. Applied and Environmental Microbiology. 86, e00499-20. https://doi.org/10.1128/aem.00499-20

Frisvad JC, Isbrandt T, and Ostenfeld Larsen T 2020. Fungal Partially Reducing Polyketides and Related Natural Products From Aspergillus, Penicillium, and Talaromyces. Comprehensive Natural Products III: Chemistry and Biology, 1:313-332. https://doi.org/10.1016/B978-0-12-409547-2.14731-6

García CF, Kretschmer M, Lozano-Andrade CN, Schönleitner M, Dragoŝ A, Kovács ÁT, Lieleg O 2020. Metal ions weaken the hydrophobicity and antibiotic resistance of Bacillus subtilis NCIB 3610 biofilms. npj biofilms and microbiomes. 6. https://doi.org/10.1038/s41522-019-0111-8

Houbraken J, Kocsubé S, Visagie CM, Yilmaz N, Wang  X-C, Meijer M, Kraak B, Hubka V, Bensch K, Samson RA, Frisvad JC 2020.  Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): An overview of families, genera, subgenera, sections, series and species. Studies in Mycology,  95. https://doi.org/10.1016/j.simyco.2020.05.002

Khatri S, Sazinas P, Shivay YS, Sharma S, Jelsbak L 2020. Complete Genome Sequence of Pseudomonas sp. Strain SK, Isolated from Organic Wheat Rhizosphere. Microbiology Resource Announcements, 9, 26. https://doi.org/10.1128/MRA.00510-20

Kiesewalter HT, Lozano-Andrade CN, Maróti G, Snyder D, Jørgensen TS, Weber T, Kovács ÁT  2020. Complete Genome Sequences of 13 Bacillus subtilis Soil Isolates for Studying Secondary Metabolite Diversity. Microbiology Resource Announcements, 9, 2 https://doi.org/10.1128/mra.01406-19

Kiesewalter  HT, Lozano-Andrade CN, Strube, ML, Kovács ÁT 2020. Secondary metabolites of Bacillus subtilis impact the assembly of soil-derived semisynthetic bacterial communities. Beilstein Journal of Organic Chemistry. 16:2983-2998. https://doi.org/10.3762/bjoc.16.248

Kjærbølling I,  Vesth TC, Frisvad JC, Nybo JL, Theobald S, Kildgaard S, Petersen TI, Kuo A, Sato A, Lyhne EK, Kogle ME, Wiebenga A, Kun  RS, Lubbers RJM, Mäkelä MR, Barry K, Chovatia M, Clum A, Daum C, Haridas S, He G, LaButti K, Lipzen A, Mondo S, Pangilinan J, Riley R, Salamov A, Simmons BA, Magnuson JK, Henrissat B, Mortensen UH, Larsen TO, de Vries RP, Grigoriev IV, Machida M, Baker SE, Andersen MR 2020. A comparative genomics study of 23 Aspergillus species from section Flavi. Nature Communications, 11, 1. https://doi.org/10.1038/s41467-019-14051-y

Kovács ÁT 2020 A fungal scent from the cheese. Environmental Microbiology. 22, 11: 4524-4526. https://doi.org/10.1111/1462-2920.15267

Liao S, Wang Y, Liu H, Fan G, Sahu SK, Jin T, Chen J, Zhang P, Gram L, Strube ML, Shi Q, Lee SMY, Liu X 2020. Deciphering the Microbial Taxonomy and Functionality of Two Diverse Mangrove Ecosystems and Their Potential Abilities To Produce Bioactive Compounds. mSystems, 5, 5. https://doi.org/10.1128/mSystems.00851-19

Malik A, Ardalani H, Anam S, McNair LM, Kromphardt KJK, Normand Frandsen RJ, Franzyk H, Staerk D, Kongstad KT 2020. Antidiabetic xanthones with α-glucosidase inhibitory activities from an endophytic Penicillium canescens. Fitoterapia, 142. https://doi.org/10.1016/j.fitote.2020.104522

Martin M, Dragoš A, Otto SB, Schäfer D, Brix, S, Maróti G, Kovács ÁT 2020. Cheaters shape the evolution of phenotypic heterogeneity in Bacillus subtilis biofilms. ISME Journal, 14. https://doi.org/10.1038/s41396-020-0685-4

Otto SB, Martin M, Schäfer D, Hartmann R, Drescher K, Brix S, Dragoš A, Kovács ÁT 2020. Privatization of Biofilm Matrix in Structurally Heterogeneous Biofilms. mSystems, 5, 4. https://doi.org/10.1128/mSystems.00425-20

Paulsen SS, Petersen TI, Kirkegaard M, Buijs Y, Strube ML, Sonnenschein EC, Larsen TO, Gram L 2020. Production of the antimicrobial compound tetrabromopyrrole and the Pseudomonas quinolone system precursor, 2-heptyl-4-quinolone, by a novel marine species Pseudoalteromonas galatheae sp. nov.. Scientific Reports, 10. https://doi.org/10.1038/s41598-020-78439-3

Thérien M, Kiesewalter HT, Auria  E, Charron-Lamoreux V, Wibowo M, Maróti G, Kovács ÁT, Beuregard PB 2020. Surfactin production is not essential for pellicle and root-associated biofilmdevelopment of Bacillus subtilis. Biofilm, 2. https://doi.org/10.1016/j.bioflm.2020.100021

Wibowo M, Ding L 2020. Chemistry and Biology of Natural Azoxy Compounds. Journal of Natural Products, 83, 11. https://doi.org/10.1021/acs.jnatprod.0c00725

Wibowo M, Gotfredsen CH, Sassetti E, Melchiorsen J, Clausen MH, Gram L, Ding L 2020. Azodyrecins A-C: Azoxides from a Soil-Derived Streptomyces Species. Journal of Natural Products, 83, 12 https://doi.org/10.1021/acs.jnatprod.0c00339 

Blin K, Shaw S, Steinke K, Villebro R, Ziemert N, Lee, Sang Y, Medema MH, Weber T 2019.  antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline. Nucleic acids research, 87. https://doi.org/10.1093/nar/gkz310

Buijs Y, Bech PK, Vazquez Albacete D,  Bentzon-Tilia M, Sonnenschein EC, Gram L, Zhang SD 2019. Marine Proteobacteria as a source of natural products: advances in molecular tools and strategies. Natural Product Reports, 36. https://doi.org/10.1039/c9np00020h

de Reus E, Nielsen MR, Frandsen RJN 2019. Metabolic and regulatory insights from the experimental Horizontal Gene Transfer of the aurofusarin and bikaverin gene clusters to Aspergillus nidulans. Molecular Microbiology, 112, 6. https://doi.org/10.1111/mmi.14376

Devi S, Kiesewalter HT, Kovács R, Frisvad JC, Weber T, Larsen TO, Kovács ÁT, Ding L 2019. Depiction of secondary metabolites and antifungal activity of Bacillus velezensis DTU001. Synthetic and Systems Biotechnology, 4, 3. https://doi.org/10.1016/j.synbio.2019.08.002

Dittmann KK, Sonnenschein EC, Egan S, Gram L, Bentzon-Tilia M 2019. Impact of Phaeobacter inhibens on marine eukaryote-associated microbial communities. Environmental Microbiology Reports. 11, 3. https://doi.org/10.1111/1758-2229.12698

Frisvad JC, Hubka V, Ezekiel CN, Hong S-B, Nováková A, Chen AJ, Arzanlou M, Larsen TO, Sklenár F, Mahakarnchanakul W, Samson RA, Houbraken J 2019. Taxonomy of Aspergillus section Flavi and their production of aflatoxins, ochratoxins and other mycotoxins. Studies in Mycology, 1 -63. https://doi.org/10.1016/j.simyco.2018.06.001

Kjeldgaard B, Listian SA, Ramaswamhi V, Richter A, Kiesewalter HT, Kovács ÁT 2019. Fungal hyphae colonization by Bacillus subtilis relies on biofilm matrix components. Biofilm, 1. https://doi.org/10.1016/j.bioflm.2019.100007

Kovács ÁT 2019 Bacillus subtilis. Trends in Microbiology, 27, 8. https://doi.org/10.1016/j.tim.2019.03.008

Kovács ÁT, Dragoš A 2019. Evolved Biofilm: Review on the Experimental Evolution Studies of Bacillus subtilis Pellicles. Journal of Molecular Biology, 431, 23. https://doi.org/10.1016/j.jmb.2019.02.005

Palazzotto E, Tong Y, Lee SY, Weber T 2019. Synthetic biology and metabolic engineering of actinomycetes for natural product discovery. Biotechnology Advances, 37, 6. https://doi.org/10.1016/j.biotechadv.2019.03.005

Phippen CBW, Jørgensen CM, Bentzon-Tilia M, Gotfredsen CH, Larsen TO, Gram L, Sonnenschein EC 2019. Isolation of Methyl Troposulfenin from Phaeobacter inhibens. Journal of Natural Products, 82, 1387-1390. https://doi.org/10.1021/acs.jnatprod.8b01097

Sartor F, Eelderink-Chen Z, Aronson B, Bosman J, Hibbert LE, Dodd AN, Kovács AT, Merrow M 2019. Are There Circadian Clocks in Non-Photosynthetic Bacteria?. MDPI Biology, 8, 8. http://dx.doi.org/10.3390/biology8020041

Sazinas P, Hansen ML, Aune MI, Fischer MH, Jelsbak L 2019. A Rare Thioquinolobactin Siderophore Present in a Bioactive Pseudomonas sp. DTU12.1. Genome Biology and Evolution, 11.  https://doi.org/10.1093/gbe/evz267

Sazinas P, Aune MI, Fischer MH,  Lauritsen JG, Gram L, Jelsbak L 2019. Complete Genome Sequence of a Bioactive Pseudomonas sp. Strain, DTU12.3, Isolated from Soil in Denmark. Microbiology Resource Announcements, 8, 16. https://doi.org/10.1128/mra.00121-19 

Dragos A, Kiesewalter HT, Martin M, Hsu CY, Hartmann R, Wechsler T, Eriksen C, Brix S, Drescher K, Stanley-Wall N, Kümmerli R, Kovács ÁT 2018. Division of Labor during Biofilm Matrix Production. Current Biology, 28, 12. https://doi.org/10.1016/j.cub.2018.04.046

Frisvad JC 2019. A critical review of producers of small lactone mycotoxins: patulin, penicillic acid and moniliformin. World Mycotoxin Journal, 11, 1. https://doi.org/10.3920/WMJ2017.2294

Kjærbølling I, Vesth TC, Frisvad JC,  Nybo JL, Theobald S,  Kuo A,  Bowyer P, Matsuda Y,  Mondo S, Lyhne EK, Kogle ME, Clum A, Lipzen A, Salamov A, Ngan CE, Daum C, Chiniquy J, Barry K, LaButti K, Haridas S, Simmons BA, Magnuson JK, Mortensen UH, Larsen TO, Grigoriev IV, Baker SE, Andersen MR  2018. Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species. Proceedings of the National Academy of Sciences of the United States of America, 115, 4. https://doi.org/10.1073/pnas.1715954115

Palazzotto E, Weber T 2018. Omics and multi-omics approaches to study the biosynthesis of secondary metabolites in microorganisms. Current Opinion in Microbiology, 45. https://doi.org/10.1016/j.mib.2018.03.004

Richter A, Hoelscher T, Pausch P, Sehrt T, Brockhaus F, Bange G, Kovács ÁT 2018. Hampered motility promotes the evolution of wrinkly phenotype in Bacillus subtilis. BMC Evolutionary Biology, 18, 1. https://doi.org/10.1186/s12862-018-1266-2

Vesth TC, Nybo JL, Theobald S, Frisvad, JC, Larsen, TO, Nielsen KF, Hoof, JB, Brandl J, Salamov A, Riley R, Gladden JM, Phatale P, Nielsen, MT, Lyhne EK, Kogle ME, Strasser K, McDonnell E, Barry K, Clum A, Chen C, LaButti  K, Haridas S, Nolan M, Sandor L, Kuo A, Lipzen A, Hainaut M,  Drula E, Tsang A, Magnuson JK, Henrissat B, Wiebenga A, Simmons BA, Mäkelä MR, de Vries RP, Grigoriev IV, Mortensen UH, Baker SE, Andersen MR 2018.  Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri. Nature Genetics. 50. https://doi.org/10.1038/s41588-018-0246-1