Recent Preprints

Cowled MS, Phippen CB, Kromphardt KJK, Clemmensen SE, Frandsen RJM, Frisvad JC, Larsen TO Unveiling the Microbial Diversity and Associated Secondary Metabolism on Black Apples. bioRχiv https://doi.org/10.1101/2023.11.02.565319

Hansen ML,  Denes Z,  Jarmusch SA,  Wibowo M,  Lozano-Andrade CN,  Kovacs AT,  Strube ML,  Andersen AJC,  Jelsbak L Resistance towards and biotransformation of Pseudomonas-produced secondary metabolites during community invasion. bioRχiv. https://doi.org/10.1101/2023.06.20.545698

Jarmusch AK, Aron AT, Petras D, Phelan VV, Bittremieux W, Acharya DD, Ahmed MMA, Bauermeister A, Bertin MJ, Boudreau PD, Borges RM, Bowen BP, Brown CJ, Chagas FO, Clevenger KD, Correia MSP, Crandall WJ, Crüsemann M, Damiani T, Fiehn O, Garg N, Gerwick WH, Gilbert JR, Globisch D, Gomes PWP, Heuckeroth S, James CA, Jarmusch SA, Kakhkhorov SA, Kang KB, Kersten RD, Kim H, Kirk RD, Kohlbacher O, Kontou EE, Liu K, Lizama-Chamu I, Luu GT, Knaan TL, Marty MT, McAvoy AC, McCall LI, Mohamed OG, Nahor O, Niedermeyer THJ, Northen TR, Overdahl KE, Pluskal T, Rainer J, Reher R, Rodriguez E, Sachsenberg TT, Sanchez LM, Schmid R, Stevens C, Tian Z, Tripathi A, Tsugawa H, Nishida K, Matsuzawa Y, van der Hooft JJJ, Vicini A, Walter A, Weber T, Xiong Q, Xu T, Zhao HN, Dorrestein PC, Wang M A Universal Language for Finding Mass Spectrometry Data Patterns. bioRχiv.https://doi.org/10.1101/2022.08.06.503000

Lyng M, Þorisdóttir P, Sveinsdóttir SH, Hansen ML, Maróti G,  Jelsbak L, Kovács ÁT Taxonomy of Pseudomonas spp determines interactions with Bacillus subtilis. bioRχiv.  https://doi.org/10.1101/2023.07.18.549276

Maleckis M, Wibowo M, Williams SE, Gotfredsen CH, Sigrist R, Souza LDO,  Cowled MS, Charusanti P, Gren T, Saha S, Moreira JMA, Weber T, Ding L. Maramycin, a cytotoxic isoquinolinequinone terpenoid produced through heterologous expression of a bifunctional indole prenyltransferase /tryptophan indole-lyase in S. albidoflavus. ACS Chemical Biology. bioRχiv.https://www.biorxiv.org/content/10.1101/2024.02.14.580309v1

Richter A, Blei F, Hu G, Schwitalla JW, Lozano-Andrade CN,  Jarmusch SA,  Wibowo M,  Kjeldgaard B,  Surabhi S, Jautzus T, Phippen CBW,  Tyc O, Arentshorst M, Wang Y,  Garbeva P,  Larsen TO,  Ram AFJ,  van den Hondel CAM,  Maróti G,  Kovács ÁT  Enhanced niche colonisation and competition during bacterial adaptation to a fungus. bioRχiv.  https://doi.org/10.1101/2023.03.27.534400

Nuhamunada M, Mohite OS, Phaneuf PV, Palsson B, Weber T. BGCFlow: Systematic pangenome workflow for the analysis of biosynthetic gene clusters across large genomic datasets. Nucleic Acids Research. bioRxiv . https://www.biorxiv.org/content/10.1101/2023.06.14.545018v1

Schmidt S, Murphy R, Vizueta J, Schierbech S, Conlon B, Kreuzenbeck N, Vreeburg S, de Peppel Lv, Aanen D, Kolotchèlèma S, Kone Ng, Beemelmanns C, Weber T, Poulsen M. Comparative genomics unravels a rich set of biosynthetic gene clusters with distinct evolutionary trajectories across fungal species farmed by termites. Communications Biology. Research Square. https://www.researchsquare.com/article/rs-3921413/v1

Xu A, Nielsen LJD, Song L, Maróti G, Strube ML, Kovács ÁT Enhanced specificity of Bacillus metataxonomics using a tuf-targeted amplicon sequencing approach. bioRχiv. https://doi.org/10.1101/2023.05.28.542609