Publications 2022

Clemmensen, S.E. ; Kromphardt, K.J.K. ; Frandsen, R.J.N.. / Marker-free CRISPR-Cas9 based genetic engineering of the phytopathogenic fungus, Penicillium expansum. In: Fungal Genetics and Biology. 2022 ; Vol. 160: 103689. https://doi.org/10.1016/j.fgb.2022.103689

Geers, A.U. ; Buijs, Y. ; Strube, M.L. ; Gram, L .; Bentzon-Tilia, M.. / The natural product biosynthesis potential of the microbiomes of Earth – bioprospecting for novel anti-microbial agents in the meta-omics era. In: Computational and Structural Biotechnology Journal. 2022 ; Vol. 20: 343-352. https://doi.org/10.1016/j.csbj.2021.12.024

Hansen, M.L. ; Wibowo, M. ; Jarmusch, S.A. ; Larsen, T.O. ; Jelsbak, L.. / Sequential interspecies interactions affect production of antimicrobial secondary metabolites in Pseudomonas protegens DTU9.1. Published online In: ISME Journal. 2022. https://doi.org/10.1038/s41396-022-01322-8

Henriksen, N.N.S.E. ; Schostag, M.D. ; Balder, S.R. ; Bech, P.K. ; Strube, M.L. ; Sonnenschein, E. ; Gram, L.. / The ability of Phaeobacter inhibens to produce tropodithietic acid influences the community dynamics of a microalgal microbiome. Published on line In: ISME Communications. 2022. https://doi.org/10.1038/s43705-022-00193-6

Henriksen, N.N.S.E. ; Lindqvist, L.L. ; Wibowo, M. ; Sonnenschein, E.C. ; Bentzon-Tilia, M. ; Gram, L.. / Role is in the eye of the beholder – the multiple functions of the antibacterial compound tropodithietic acid produced by marine Rhodobacteraceae. In: FEMS Microbiology Review. 2022 ; Vol. 46(3): fuac007. https://doi.org/10.1093/femsre/fuac007

Jakab, Á. ; Kovács,  F. ; Balla, N. ; Tóth, Z. ; Ragyák, Á. ; Sajtos, Z. ; Csillag, K. ; Nagy-Köteles, C. ; Nemes, D. ;  Pócsi, I. ; Majoros, L. ; Kovács, Á.T. ; Kovács, R.. / Physiological and transcriptional profiling of surfactin exerted antifungal effect against Candida albicans. In: Biomedicine & Pharmacotherapy. 2022 ; Vol. 152: 113220. https://doi.org/10.1016/j.biopha.2022.113220

Jautzus, T. ; van Gestel, J. ; Kovács , Á.T.. / Complex extracellular biology drives surface competition in Bacillus subtilis. In: ISME Journal. 2022 ; Vol. 16: 2320-2328. https://doi.org/10.1038/s41396-022-01279-8

Khatri, S. ; Dubey, S. ; Shivay, Y.S. ; Jelsbak, L. ; Sharma S.. /Organic farming induces changes in bacterial community and disease suppressiveness against fungal phytopathogens. In: Applied Soil Ecology. 2022 ; Vol.181 (2023) 104658. https://doi.org/10.1016/j.apsoil.2022.104658

Kjeldgaard, B. ; Neves, A.R. ; Fonseca, C. ;  Kovács, Á.T. ; Domínguez-Cuevas, P.. / Quantitative high-throughput screening methods designed for identification of bacterial biocontrol strains with antifungal properties. In: Microbiology Spectrum. 2022 ; Vol. 10, Issue 2, e01433-21. https://doi.org/10.1128/spectrum.01433-21

Lin, Y. ; Xu, X. ; Maróti, G. ; Strube, M.L. ; Kovács, Á.T.. / Adaptation and phenotypic diversification of Bacillus thuringiensis biofilm are accompanied by fuzzy spreader morphotypes. In: NPJ Biofilms and Microbiomes. 2022 ; Vol. 8: 27. https://doi.org/10.1038/s41522-022-00292-1

Nordgaard, M. ; Blake, C. ; Maróti, G. ; Strube, M.L. ; Kovács, Á.T.. / Experimental evolution of Bacillus subtilis on Arabidopsis thaliana roots reveals fast adaptation and improved root colonization. In: iScience. 2022 ; Vol. 25(6): 104406. https://doi.org/10.1016/j.isci.2022.104406

Peixoto, R. ; Voolstra, C.R. ; Sweet, M. ; Duarte, C. ; Carvalho, S. ; Villela, H. ; Lunshof, J.E. ; Gram, L. ; Woodhams, D.C. ; Walter, J. ; Roik, A. ; Hentschel, U. ; Vega, Thurber R. ; Daisley, B. ; Ushijima, B. ; Daffonchio, D. ; Costa, R. ; Keller-Costa, T. ; Bowman, J. ; Rosado, A.S. ; Reid, G. ; Mason, C. ; Walke, J.B. ; Thomas, T. ; Berg, G.. / Harnessing the microbiome to prevent global biodiversity loss. In: Nature Microbiology. 2022 ; Vol. 7: 1726-1735.https://doi.org/10.1038/s41564-022-01173-1

Perini, L. ; Gostinčar, C. ; Likar, M. ; Frisvad, J.C. ; Kostanjšek, R. ; Nicholes, M. ; Williamson, C. ; Anesio, A.M. ; Zalar, P. ; Gunde-Cimerman, N.. / Interactions of Fungi and Algae from the Greenland Ice Sheet. Published online In: Environmental Microbiology. 2022. https://link.springer.com/article/10.1007/s00248-022-02033-5

Sanchez-Navarro, R. ; Nuhamunada, M. ; Mohite, O. ; Wasmund, K. ; Albertsen, M. ; Gram, L. ; Nielsen, P.H. ; Weber, T. ; Singleton, C.. / Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem. In: mSystems. 2022 ; 20:7(6). https://doi.org/10.1128/msystems.00632-22

Schostag, M.D. ; Gobbi, A. ; Fini, M.N. ; Ellegaard-Jensen, L. ; Aamand, J. ; Hansen, L.H. ; Muff, J. ; Albers, C.N.. / Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue. In: Water Research. 2022 ; Vol. 216: 118352. https://doi.org/10.1016/j.watres.2022.118352

Shaaban, M. ; Abdel-Razek, A.S. ; Previtali, V. ; Hartvig, C.M. ; Gotfredsen, C.H. ; Laatsch, H. ; Ding, L.. / Sulochrins and alkaloids from a fennel endophyte Aspergillus sp. FVL2. Published online In: Natural Product Research. 2022. https://doi.org/10.1080/14786419.2021.2005054

Sun, X. ; Xu, Z. ; Xie, J. ; Thomsen, V.H. ; Tan, T. ; Zheng, D. ; Strube, M.L. ; Dragos, A. ; Shen, Q. ; Zhang, R. ; Kovács, Á.T.. / Bacillus velezensis stimulates resident rhizosphere Pseudomonas stutzeri for plant health through metabolic interactions. In: ISME Journal. 2022 ; Vol.16(3): 774–787. https://doi.org/10.1038/s41396-021-01125-3

Terlouw, B.R. ; Blin, K. ; Navarro-Muñoz, J.C. ; Avalon, N.E. ; Chevrette, M.G. ; Egbert, S. ; Lee, S. ; Meijer, D. ; Recchia, M.J.J. ; Reitz, Z.L. ; van Santen, J. A. ; Selem-Mojica, N. ; Tørring, T. ; Zaroubi, L. ; Alanjary, M. ; Aleti, G. ; Aguilar, C. ; Al-Salihi, S.A.A. ; Augustijn, H.E. ; Avelar-Rivas, J.A. ; Avitia-Domínguez, L.A. ; Barona-Gómez, F. ; Bernaldo-Agüero, J. ; Bielinski, V.A. ; Biermann, F. ; Booth, T.J. ; Bravo, V.J.C. ; Castelo-Branco, R. ; Chagas, F.O. ; Cruz-Morales, P. ; Du, C. ; Duncan, K.R. ; Gavriilidou, A. ; Gayrard, D. ; Gutiérrez-García, K. ; Haslinger, K. ; Helfrich, E.J.N. ; van der Hooft, J. J. J. ; Jati, A.P. ; Kalkreuter, E. ; Kalyvas, N. ; Kang, K.B. ; Kautsar, S. ; Kim, W. ; Kunjapur, A.M. ; Li, Y.-X. ; Lin, G.-M. ; Loureiro, C. ; Louwen, J.J.R. ; Louwen, N.L.L. ; Lund, G. ; Parra, J. ; Philmus, B. ; Pourmohsenin, B. ; Pronk, L.J.U. ; Rego, A. ; Rex, D.A.B. ; Robinson, S. ; Rosas-Becerra, L.R. ; Roxborough, E.T. ; Schorn, M.A. ; Scobie, D.J. ; Singh, K.S. ; Sokolova, N. ; Tang, X. ; Udwary, D. ; Vigneshwari, A. ; Vind, K. ; Vromans, S.P.J.M. ; Waschulin, V. ; Williams, S.E. ; Winter, J.M. ; Witte, T.E. ; Xie, H. ; Yang, D. ; Yu, J. ; Zdouc, M. ; Zhong, Z. ; Collemare, J. ; Linington, R.G. ; Weber, T. ; Medema, M.H.. / MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Published online In: Nucleic Acids Research. 2022. https://doi.org/10.1093/nar/gkac1049

Tesdorpf, J.E. ; Geers, A.U. ; Strube, M.L. ; Gram, L. ; Bentzon-Tilia, M.. / Roseobacter Group Probiotics Exhibit Differential Killing of Fish Pathogenic Tenacibaculum Species. In: Applied and Environmental Microbiology. 2022 ; Vol. 88, No. 6. https://doi.org/10.1128/aem.02418-21

Wang, X. ; Jarmusch, S.A. ; Frisvad, J.C. ; Larsen, T.O.. / Current status of secondary metabolite pathways linked to their related biosynthetic gene clusters in Aspergillus section Nigri. Published online In: Natural Product Reviews. 2022. https://doi.org/10.1039/D1NP00074H

Wang, X. ; Serrano, R. ; González-Menéndez, V. ; Mackenzie, T.A. ; Ramos, M.C. ; Frisvad, J.C. ; Larsen, T.O.. / A Molecular Networking Based Discovery of Diketopiperazine Heterodimers and Aspergillicins from Aspergillus caelatus. In: Journal of Natural Products. 2022 ; Vol. 85, 1: 25-33. https://doi.org/10.1021/acs.jnatprod.1c00526 

Wang, Y. ; Wang, X. ; Sun, S. ; Jin, C. ; Su, J. ; Wei, J. ; Luo, X. ; Wen, J. ; Wei, T. ; Sahu, S.K. ; Zou, H. ; Chen, H. ; Mu, Z. ; Zhang, G. ; Liu, X. ; Xu, X. ; Gram, L. ; Yang, H. ; Wang, E. ; Liu, H.. / GWAS, MWAS and mGWAS provide insights into precision agriculture based on genotype-dependent microbial effects in foxtail millet. In: Nature Communications. 2022 ; Vol. 13, article number 5913. https://doi.org/10.1038/s41467-022-33238-4 

Zhang, S.D. ; Lindqvist, L.L. ; Isbrandt, T. ; Borre, I. ; Wibowo, M. ; Wennekers, Nielsen M. ; Ding, L. ; Larsen, T.O. ; Gram L.. / Solonamides, a Group of Cyclodepsipeptides, Influence Motility in the Native Producer Photobacterium galatheae S2753. In: Applied and Environmental Microbiology. 2022 ; Vol 88, No. 17. https://doi.org/10.1128/aem.01105-22