Publications 2022

Clemmensen SE, Kromphardt KJK, Frandsen RJN 2022. Marker-free CRISPR-Cas9 based genetic engineering of the phytopathogenic fungus, Penicillium expansum. Fungal Genetics and Biology 160:103689. https://doi.org/10.1016/j.fgb.2022.103689

Geers AU, Buijs Y,  Strube ML, Gram L, Bentzon-Tilia M 2022. The natural product biosynthesis potential of the microbiomes of Earth – bioprospecting for novel anti-microbial agents in the meta-omics era. Computational and Structural Biotechnology Journal 20:343-352. https://doi.org/10.1016/j.csbj.2021.12.024

Hansen ML, Wibowo M, Jarmusch SA, Larsen TO, Jelsbak L 2022. Sequential interspecies interactions affect production of antimicrobial secondary metabolites in Pseudomonas protegens DTU9.1. ISME Journal 16:2680-2690 https://doi.org/10.1038/s41396-022-01322-8

Henriksen NNSE, Schostag MD, Balder SR, Bech PK, Strube ML, Sonnenschein E, Gram L 2022. The ability of Phaeobacter inhibens to produce tropodithietic acid influences the community dynamics of a microalgal microbiome. ISME Communications.2:109 https://doi.org/10.1038/s43705-022-00193-6

Henriksen NNSE, Lindqvist LL, Wibowo M, Sonnenschein EC, Bentzon-Tilia M, Gram L 2022. Role is in the eye of the beholder – the multiple functions of the antibacterial compound tropodithietic acid produced by marine Rhodobacteraceae. FEMS Microbiology Review 46:fuac007. https://doi.org/10.1093/femsre/fuac007

Jakab Á, Kovács F, Balla N, Tóth Z, Ragyák Á, Sajtos Z, Csillag K, Nagy-Köteles C, Nemes D,  Pócsi I, Majoros L, Kovács ÁT,  Kovács R 2022 Physiological and transcriptional profiling of surfactin exerted antifungal effect against Candida albicans. Biomedicine & Pharmacotherapy 152:113220 https://doi.org/10.1016/j.biopha.2022.113220

Jautzus T, van Gestel J, Kovács ÁT 2022. Complex extracellular biology drives surface competition in Bacillus subtilis. ISME Journal 16:2320-2328. https://doi.org/10.1038/s41396-022-01279-8

Khatri S, Dubey S, Shivay YS, Jelsbak L, Sharma S 2022. Organic farming induces changes in bacterial community and disease suppressiveness against fungal phytopathogens. Applied Soil Ecology 181:104658. https://doi.org/10.1016/j.apsoil.2022.104658

Kjeldgaard B, Neves AR, Fonseca C,  Kovács ÁT, Domínguez-Cuevas P 2022. Quantitative high-throughput screening methods designed for identification of bacterial biocontrol strains with antifungal properties. Microbiology Spectrum. 10:e01433-21. https://doi.org/10.1128/spectrum.01433-21

Lin Y, Xu X, Maróti G, Strube ML, Kovács ÁT 2022. Adaptation and phenotypic diversification of Bacillus thuringiensis biofilm are accompanied by fuzzy spreader morphotypes. npj Biofilms and Microbiomes 8:27. https://doi.org/10.1038/s41522-022-00292-1

Nordgaard M, Blake C, Maróti G, Strube ML, Kovács ÁT 2022. Experimental evolution of Bacillus subtilis on Arabidopsis thaliana roots reveals fast adaptation and improved root colonization. iScience 25:104406. https://doi.org/10.1016/j.isci.2022.104406

Peixoto R, Voolstra CR, Sweet M, Duarte C, Carvalho S, Villela H, Lunshof JE, Gram L, Woodhams DC, Walter J, Roik A, Hentschel U, Vega Thurber R, Daisley B, Ushijima B, Daffonchio D,  Costa R, Keller-Costa T, Bowman J, Rosado AS, Reid G, Mason C, Walke JB, Thomas T, Berg G 2022. Harnessing the microbiome to prevent global biodiversity loss. Nature Microbiology 7:1726-1735.https://doi.org/10.1038/s41564-022-01173-1

Perini L, Gostincar C, Lilov M, Frisvad JC, Kostansek R, Nicoles M, Williamson C, Anesio, M., Zalar P, Gunde-Cimerman N 2022. Interactions of Fungi and Algae from the Greenland Ice Sheet. Environmental Microbiology 86:282-296 https://link.springer.com/article/10.1007/s00248-022-02033-5

Sanchez-Navarro R, Nuhamunada M, Mohite O, Wasmund K, Albertsen M, Gram L, Nielsen PH, Weber T, Singleton C 2022.  Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem. mSystems 20:6. https://doi.org/10.1128/msystems.00632-22

Schostag MD,  Gobbi A,  Fini MN, Ellegaard-Jensen L, Aamand J, Hansen LH, Muff J, Albers CN 2022. Combining reverse osmosis and microbial degradation for remediation of drinking water contaminated with recalcitrant pesticide residue. Water Research 216:118352. https://doi.org/10.1016/j.watres.2022.118352

Shaaban M, Abdel-Razek AS, Previtali V, Hartvig CM, Gotfredsen CH, Laatsch H, Ding L 2022. Sulochrins and alkaloids from a fennel endophyte Aspergillus sp. FVL2. Natural Product Research 37:1310-1320. https://doi.org/10.1080/14786419.2021.2005054. NB: Issue published in 2023

Sun X, Xu Z, Xie J, Hesselberg-Thomsen V, Tan T, Zheng D, Strube ML, Dragoš A, Shen Q, Zhang R, Kovács ÁT 2022. Bacillus velezensis stimulates resident rhizosphere Pseudomonas stutzeri for plant health through metabolic interactions. ISME Journal 16:774–787. https://doi.org/10.1038/s41396-021-01125-3

Terlouw BR, Blin K, Navarro-Muñoz JC,  Avalon N, Chevrette MG, Egbert S, Lee S, Meijer D, Recchia MJJ, Reitz ZL, van Santen JA, Selem-Mojica N, Tørring T, Zaroubi L, Alanjary M, Aleti G, Aguilar C, Al-Salihi SAA, Augustijn HE, Avelar-Rivas JA, Avitia-Domínguez LA, Barona-Gomez F, Bernaldo-Agüero J, Bielinski VA, Biermann F,  Booth TJ, Carrion Bravo VJ, Castelo-Branco R, Chagas FO, Cruz-Morales P, Du C, Duncan KR, Gavriilidou A, Gayrard D, Gutiérrez-García K, Haslinger K, Helfrich EJN, van der Hooft JJJ, Jati AP, Kalkreuter E, Kalyvas N, Kang KB, Kautsar S, Kim W, Kunjapur A, Li YX, Lin GM, Loureiro C, Louwen JJR, Louwen NL, Lund G, Parra J, Philmus B, Pourmohsenin B, Pronk LJU, Rego A, Rex DAB, Robinson S, Rosas-Becerra LR, Roxborough ET, Schorn MA, Scobie DJ, Singh KS, Sokolova N, Tang X, Udwary D, Vigneshwari A, Vind K, Vromans SPJM, Waschulin V, Williams SE, Winter J, Witte TE, Xie H, Yang D, Yu J, Zdouc M, Zhong Z, Collemare J, Linington RG, Weber T, Medema MH 2022. MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Nucleic Acids Research 51:D603-D610 https://doi.org/10.1093/nar/gkac1049. NB: Issue published in 2023

Tesdorpf JE, Geers AU,  Strube ML, Gram L, Bentzon-Tilia M 2022. Roseobacter Group Probiotics Exhibit Differential Killing of Fish Pathogenic Tenacibaculum Species. Applied and Environmental Microbiology. 88:6. https://doi.org/10.1128/aem.02418-21

Wang X, Jarmusch SA, Frisvad JC, Larsen TO 2022. Current status of secondary metabolite pathways linked to their related biosynthetic gene clusters in Aspergillus section Nigri. Natural Product Reviews 40:237-372 https://doi.org/10.1039/D1NP00074H. NB: Issue published in 2023

Wang X, Serrano R, González-Menéndez V, Mackenzie TA, Ramos MC, Frisvad JC, Larsen TO 2022.  A Molecular Networking Based Discovery of Diketopiperazine Heterodimers and Aspergillicins from Aspergillus caelatus. Journal of Natural Products. 85:25-33. https://doi.org/10.1021/acs.jnatprod.1c00526 

Wang Y, Wang X,  Sun S, Jin C, Su J, Wei J, Luo X, Wen J, Wei T, Sahu SK, Zou H, Chen H, Zhang G, Liu X, Xu X, Gram L, Yang H, Wang E, Liu H 2022.  GWAS, MWAS and mGWAS provide insights into precision agriculture based on genotype-dependent microbial effects in foxtail millet. Nature Communications 13:5913. https://doi.org/10.1038/s41467-022-33238-4 

Zhang SD, Lindqvist LL, Isbrandt T, Borre I, Wibowo M, Wennekers Nielsen M, Ding L, Larsen TO, Gram L 2022. Solonamides, a Group of Cyclodepsipeptides, Influence Motility in the Native Producer Photobacterium galatheae S2753. Applied and Environmental Microbiology. 88:17. https://doi.org/10.1128/aem.01105-22